Evidence map›Paper›PMID 29097544›Full record

ArticleScience (New York, N.Y.)2017

ER-mitochondria tethering by PDZD8 regulates Ca

Yusuke Hirabayashi, Seok-Kyu Kwon, Hunki Paek, Wolfgang M Pernice, Maëla A Paul, Jinoh Lee, Parsa Erfani, Ashleigh Raczkowski, Donald S Petrey, Liza A Pon and 1 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 300 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
300citing papers in PubMed, 3 pooled it
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

300 citing papers in PubMed, 3 syntheses or guidelines pooled it, 474 citations in OpenAlex.

  1. Pooled it
  2. Stay in touch with the endoplasmic reticulum.Science China. Life sciences · 2024
    Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Asymmetric distribution of mitochondrial CaExperimental & molecular medicine · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

240 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Yusuke HirabayashiDepartment of Neuroscience, Columbia University Medical Center, Columbia University, New York, NY 10027, USA.ORCID 0000-0003-3950-6781
Seok-Kyu KwonDepartment of Neuroscience, Columbia University Medical Center, Columbia University, New York, NY 10027, USA.ORCID 0000-0002-7280-9867
Hunki PaekDepartment of Neuroscience, Columbia University Medical Center, Columbia University, New York, NY 10027, USA.ORCID 0000-0003-2333-6909
Wolfgang M PerniceDepartment of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA.ORCID 0000-0001-9176-621X
Maëla A PaulDepartment of Neuroscience, Columbia University Medical Center, Columbia University, New York, NY 10027, USA.ORCID 0000-0002-3637-0439
Jinoh LeeDepartment of Neuroscience, Columbia University Medical Center, Columbia University, New York, NY 10027, USA.ORCID 0000-0002-2158-8507
Parsa ErfaniDepartment of Neuroscience, Columbia University Medical Center, Columbia University, New York, NY 10027, USA.
Ashleigh RaczkowskiSimons Electron Microscopy Center, New York Structural Biology Center (NYSBC), New York, NY 10027, USA.ORCID 0000-0002-8572-5857
Donald S PetreyCenter for Computational Biology and Bioinformatics, Department of Systems Biology, Columbia University, New York, NY 10032, USA.
Liza A PonDepartment of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA.
Franck PolleuxDepartment of Neuroscience, Columbia University Medical Center, Columbia University, New York, NY 10027, USA. fp2304@cumc.columbia.edu.ORCID 0000-0003-4313-0481
Columbia University Irving Medical Center · USColumbia University · USHoward Hughes Medical Institute · USNew York Structural Biology Center · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
Mitochondrial inheritance and quality controlR35GM122589 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Liza A Pon · 2017 to 2026
$5.1M
COMPUTER STUDIES OF PROTEIN STRUCTURE AND FUNCTIONR01GM030518 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HONIG, BARRY H · 1985 to 2020
$4.5M
MITOCHONDRIAL MOTILITY AND INHERITANCER01GM045735 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PON, LIZA A · 1993 to 2016
$4.2M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
Dual-Beam Scanning Electron Microscope for New York Structural Biology CenterS10RR029300 · NCRR · NEW YORK STRUCTURAL BIOLOGY CENTER · PI STOKES, DAVID L. · 2010 to 2010
$2.0M
A kinase pathway required for terminal axon branching and presynaptic functionR01NS089456 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI POLLEUX, FRANCK · 2014 to 2017
$1.6M
COMPUTER STUDIES OF PROTEIN STRUCTURE AND FUNCTIONR37GM030518 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HONIG, BARRY H · 1995 to 2004
$1.5M
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
Super-resolution structured illumination microscopeS10OD014584 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PON, LIZA A · 2013 to 2013
$579k
Tecan EVO GenePaint robotS10OD016167 · OD · BAYLOR COLLEGE OF MEDICINE · PI LJUNGBERG, CECILIA · 2013 to 2013
$215k
NCI NIH HHS P30 CA013696NCRR NIH HHS S10 RR029300NICHD NIH HHS U54 HD083092NIGMS NIH HHS R01 GM030518NIGMS NIH HHS R01 GM045735NIGMS NIH HHS R35 GM122589NIGMS NIH HHS R37 GM030518NIH HHS S10 OD012351NIH HHS S10 OD014584NIH HHS S10 OD016167NIH HHS S10 OD021764NINDS NIH HHS R01 NS089456
6 · The paper itself

Abstract

Interfaces between organelles are emerging as critical platforms for many biological responses in eukaryotic cells. In yeast, the ERMES complex is an endoplasmic reticulum (ER)-mitochondria tether composed of four proteins, three of which contain a SMP (synaptotagmin-like mitochondrial-lipid binding protein) domain. No functional ortholog for any ERMES protein has been identified in metazoans. Here, we identified PDZD8 as an ER protein present at ER-mitochondria contacts. The SMP domain of PDZD8 is functionally orthologous to the SMP domain found in yeast Mmm1. PDZD8 was necessary for the formation of ER-mitochondria contacts in mammalian cells. In neurons, PDZD8 was required for calcium ion (Ca

Indexed as

Calcium SignalingAdaptor Proteins, Signal TransducingAnimalsCalciumDendritesEndoplasmic ReticulumGenetic Complementation TestHEK293 CellsHumansMembrane ProteinsMiceMitochondriaNeuronsProtein DomainsReceptors, Metabotropic GlutamateReceptors, N-Methyl-D-AspartateAdaptor Proteins, Signal TransducingCalciumMembrane ProteinsMMM1 protein, S cerevisiaePdzd8 protein, mouseReceptors, Metabotropic GlutamateReceptors, N-Methyl-D-AspartateSaccharomyces cerevisiae Proteins

Identifiers

PMID29097544
PMCPMC5818999
OpenAlexW2766127467

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.