Evidence map›Paper›PMID 29096389›Full record

ArticleJournal of clinical virology : the official publication of the Pan American Society for Clinical Virology2017

Detection and differentiation of HIV-2 using the point-of-care Alere q HIV-1/2 Detect nucleic acid test.

Ming Chang, Katrin Steinmetzer, Dana N Raugi, Robert A Smith, Selly Ba, Fatima Sall, Moussa Seydi, Alassane Niang, ElHadji Ibrahima Sall, Ousseynou Cisse and 3 more

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Long-term Experience and Outcomes of Programmatic Antiretroviral Therapy for Human Immunodeficiency Virus Type 2 Infection in Senegal, West Africa.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Observational
  4. Article
  5. Nucleic acid testing and molecular characterization of HIV infections.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Ming ChangDepartment of Laboratory Medicine, University of Washington, Seattle, WA, USA.
Katrin SteinmetzerAlere Technologies GmbH, Germany.
Dana N RaugiDepartment of Medicine/Allergy & Infectious Diseases, University of Washington, Seattle, WA, USA.
Robert A SmithDepartment of Medicine/Allergy & Infectious Diseases, University of Washington, Seattle, WA, USA.
Selly BaService des Maladies Infectieuses, CHNU de Fann, Dakar, Senegal.
Fatima SallService des Maladies Infectieuses, CHNU de Fann, Dakar, Senegal.
Moussa SeydiService des Maladies Infectieuses, CHNU de Fann, Dakar, Senegal.
Alassane NiangCentre de Sante, Ziguinchor, Casamance, Senegal.
ElHadji Ibrahima SallCentre de Sante, Ziguinchor, Casamance, Senegal.
Ousseynou CisseCentre de Sante, Ziguinchor, Casamance, Senegal.
Katja RödelAlere Technologies GmbH, Germany.
Robert W CoombsDepartment of Laboratory Medicine, University of Washington, Seattle, WA, USA; Department of Medicine/Allergy & Infectious Diseases, University of Washington, Seattle, WA, USA.
Geoffrey S GottliebDepartment of Medicine/Allergy & Infectious Diseases, University of Washington, Seattle, WA, USA; Department of Global Health, University of Washington, Seattle, WA, USA. Electronic address: gottlieb@uw.edu.
University of Washington · USCentre Hospitalier National Universitaire de Fann · SNZiguinchor University · SNAlere (Germany) · DE

Funding

LC: HIV Vaccine Trials NetworkUM1AI068618 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Margaret Juliana McElrath · 2011 to 2026
$483.6M
Validation, CLIA and Qualification (VQC): Enhancing the RS ratio as a tool for AIDS Clinical Trial Group (ACTG) tuberculosis trialsUM1AI106701 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Grace M Aldrovandi · 2014 to 2026
$116.8M
University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
HVTN Laboratory ProgramU01AI068618 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MCELRATH, MARGARET JULIANA · 2006 to 2010
$82.6M
Improving Diagnosis, Treatment & Detection of Drug Resistance in HIV-2 InfectionR01AI120765 · NIAID · UNIVERSITY OF WASHINGTON · PI Geoffrey Scott Gottlieb · 2015 to 2026
$8.9M
Antiretroviral Therapy for HIV-2 Infection in SenegalR01AI060466 · NIAID · UNIVERSITY OF WASHINGTON · PI GOTTLIEB, GEOFFREY SCOTT · 2005 to 2014
$6.5M
NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI060466NIAID NIH HHS R01 AI120765NIAID NIH HHS U01 AI068618NIAID NIH HHS UM1 AI068618NIAID NIH HHS UM1 AI106701
6 · The paper itself

Abstract

backgroundThe Alere q HIV-1/2 Detect test (Alere Detect) is a rapid point-of-care (POC) nucleic acid test (NAT) that can detect and differentiate HIV-1 and HIV-2 in 25-μL whole blood or plasma samples. The Alere Detect test has been validated for early infant diagnosis of HIV-1 infection, and it is the only POC NAT device currently known to detect HIV-2, which is endemic in West Africa.

objectivesTo evaluate the sensitivity detecting HIV-2 RNA and the differential performance of the Alere Detect. STUDY

designPlasma samples from non-HIV (n=4), HIV-1 (n=22), HIV-2 (n=111; 29 Group A, 2 Group B) and HIV-1/HIV-2 dually-seropositive (n=8) participants in Senegal and the United States and HIV-2 reference strains (3 Group A, 1 Group B) were tested by Alere Detect, Abbott RealTime HIV-1 and the University of Washington HIV-2 RNA quantitative (UW HIV-2) assays.

resultsThe Alere Detect correctly differentiated between HIV-1 and HIV-2 in all 80 (100%) patient samples with detectable HIV RNA (n=20 HIV-1, 60 HIV-2). The overall HIV-2 detection concordance between Alere Detect and the UW HIV-2 assay was 68% (54/80); the concordance improved to 100% (30/30) for samples with HIV-2 RNA >300copies/mL. Neither assay detected HIV-2 RNA in 31 of 111 HIV-2 seropositive samples.

conclusionsThe Alere Detect test is a novel device detecting HIV RNA in clinical samples, and differentiating HIV-1 and HIV-2 with a high level of specificity. It has the potential for use as a rapid HIV-2 NAT-based diagnosis tool in resource-limited settings and to confirm HIV-2 infection for the CDC 4th generation HIV-1/2 diagnostic algorithm.

Indexed as

Point-of-Care SystemsAfrica, WesternEarly DiagnosisHIV-1HIV-2HIV InfectionsHumansMass ScreeningMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesRNA, ViralSenegalSensitivity and SpecificityUnited StatesRNA, ViralAlere q HIV-1/2 DetectDiagnosisHIV-2Nucleic acid testPoint-of-careQualitative

Identifiers

PMID29096389
PMCPMC5700839
OpenAlexW2767038733

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.