Evidence map›Paper›PMID 29093485›Full record

ArticleScientific reports2017

Dynamic fingerprinting of sub-cellular nanostructures by image mean square displacement analysis.

Luca Digiacomo, Francesca D'Autilia, William Durso, Paolo Maria Tentori, Giulio Caracciolo, Francesco Cardarelli

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

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  10. EM-based algorithms for single particle tracking of Ornstein-Uhlenbeck motion from sCMOS camera data.Proceedings of the ... American Control Conference. American Control Conference · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Luca DigiacomoDepartment of Molecular Medicine, "La Sapienza" University of Rome, Roma, Italy.ORCID 0000-0003-3362-7160
Francesca D'AutiliaCenter for Nanotechnology Innovation@NEST, Istituto Italiano di Tecnologia, Pisa, Italy.
William DursoCenter for Nanotechnology Innovation@NEST, Istituto Italiano di Tecnologia, Pisa, Italy.
Paolo Maria TentoriCenter for Nanotechnology Innovation@NEST, Istituto Italiano di Tecnologia, Pisa, Italy.
Giulio CaraccioloDepartment of Molecular Medicine, "La Sapienza" University of Rome, Roma, Italy. giulio.caracciolo@uniroma1.it.
Francesco CardarelliNEST - Scuola Normale Superiore, Istituto Nanoscienze - CNR (CNR-NANO), Pisa, Italy. francesco.cardarelli@nano.cnr.it.
Italian Institute of Technology · ITSapienza University of Rome · ITIstituto Nanoscienze · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we provide demonstration that image mean square displacement (iMSD) analysis is a fast and robust platform to address living matter dynamic organization at the level of sub-cellular nanostructures (e.g. endocytic vesicles, early/late endosomes, lysosomes), with no a-priori knowledge of the system, and no need to extract single trajectories. From each iMSD, a unique triplet of average parameters (namely: diffusivity, anomalous coefficient, size) are extracted and represented in a 3D parametric space, where clustering of single-cell points readily defines the structure "dynamic fingerprint", at the whole-cell-population level. We demonstrate that different sub-cellular structures segregate into separate regions of the parametric space. The potency of this approach is further proved through application to two exemplary, still controversial, cases: i) the intracellular trafficking of lysosomes, comprising both free diffusion and directed motion along cytoskeletal components, and ii) the evolving dynamic properties of macropinosomes, passing from early to late stages of intracellular trafficking. We strongly believe this strategy may represent a flexible, multiplexed platform to address the dynamic properties of living matter at the sub-cellular level, both in the physiological and pathological state.

Indexed as

EndocytosisDiffusionEndosomesHeLa CellsHumansImage Processing, Computer-AssistedKineticsLysosomesMicroscopy, ConfocalMicroscopy, Fluorescence

Identifiers

PMID29093485
PMCPMC5665924
OpenAlexW2765603150

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.