Evidence map›Paper›PMID 29093472›Full record

ArticleNature communications2017

The asparagus genome sheds light on the origin and evolution of a young Y chromosome.

Alex Harkess, Jinsong Zhou, Chunyan Xu, John E Bowers, Ron Van der Hulst, Saravanaraj Ayyampalayam, Francesco Mercati, Paolo Riccardi, Michael R McKain, Atul Kakrana and 32 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 170 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
170citing papers in PubMed, 1 pooled it
55.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

170 citing papers in PubMed, 1 synthesis or guideline pooled it, 341 citations in OpenAlex.

  1. Pooled it
  2. A highly contiguous genome assembly of Cyclamen persicum to accelerate functional genomics and breeding.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
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  9. Recreating viable YYNature communications · 2026
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110 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

42 authors at 18 institutions in 7 countries.

Alex HarkessDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.
Jinsong ZhouInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, 330200, Nanchang, China.
Chunyan XuBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.ORCID http://orcid.org/0000-0003-4095-9569
John E BowersDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.
Ron Van der HulstLimgroup B.V., 5961 NV, Horst, The Netherlands.
Saravanaraj AyyampalayamDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.
Francesco MercatiDipartimento AGRARIA, Università Mediterranea degli Studi di Reggio Calabria, 89124, Reggio Calabria, Italy.
Paolo RiccardiConsiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria (CREA), Research Unit for Vegetable Crops, 26836, Montanaso Lombardo, Lodi, Italy.
Michael R McKainDonald Danforth Plant Science Center, St. Louis, MO, 63132, USA.ORCID http://orcid.org/0000-0002-9091-306X
Atul KakranaDepartment of Plant and Soil Science, University of Delaware, Newark, DE, 19711, USA.
Haibao TangCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology (HIST), Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China.ORCID http://orcid.org/0000-0002-3460-8570
Jeremy RayDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.
John GroenendijkGreen Acres Life Science, De Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands.
Siwaret ArikitDepartment of Plant and Soil Science, University of Delaware, Newark, DE, 19711, USA.
Sandra M MathioniDonald Danforth Plant Science Center, St. Louis, MO, 63132, USA.
Mayumi NakanoDonald Danforth Plant Science Center, St. Louis, MO, 63132, USA.
Hongyan ShanState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
Alexa Telgmann-RauberDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.
Akira KannoGraduate School of Life Sciences, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai, 980-8577, Japan.
Zhen YueBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Haixin ChenBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Wenqi LiBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Yanling ChenBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Xiangyang XuBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Yueping ZhangInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, 330200, Nanchang, China.
Shaochun LuoInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, 330200, Nanchang, China.
Helong ChenInstitute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China.
Jianming GaoEnvironment and Plant Protection Research Institute, Chinese Academy of Tropical Agriculture Sciences, Haikou, 571101, China.
Zichao MaoCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China.
J Chris PiresDivision of Biological Sciences, University of Missouri, Columbia, MO, 65211, USA.ORCID http://orcid.org/0000-0001-9682-2639
Meizhong LuoCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, China.
Dave KudrnaArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, Tucson, AZ, 85750, USA.
Rod A WingArizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, Tucson, AZ, 85750, USA.ORCID http://orcid.org/0000-0001-6633-6226
Blake C MeyersDonald Danforth Plant Science Center, St. Louis, MO, 63132, USA.ORCID http://orcid.org/0000-0003-3436-6097
Kexian YiInstitute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China.
Hongzhi KongState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-0034-0510
Pierre LavrijsenLimgroup B.V., 5961 NV, Horst, The Netherlands.
Francesco SunseriDipartimento AGRARIA, Università Mediterranea degli Studi di Reggio Calabria, 89124, Reggio Calabria, Italy.ORCID http://orcid.org/0000-0001-5201-5413
Agostino FalavignaConsiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria (CREA), Research Unit for Vegetable Crops, 26836, Montanaso Lombardo, Lodi, Italy.
Yin YeBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China. yinye@genomics.cn.
James H Leebens-MackDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA. jleebensmack@uga.edu.ORCID http://orcid.org/0000-0003-4811-2231
Guangyu ChenInstitute of Vegetables and Flowers, Jiangxi Academy of Agricultural Sciences, 330200, Nanchang, China. genebksh@hotmail.com.
BGI Group (China) · CNUniversity of Georgia · USInstitute of Vegetables and Flowers · CNDonald Danforth Plant Science Center · USChinese Academy of Sciences · CNBayer (Germany) · DEChinese Academy of Tropical Agricultural Sciences · CNEnvironment and Plant Protection Research Institute · CNFujian Agriculture and Forestry University · CNHuazhong Agricultural University · CNInstitute of Biosciences and Bioresources · ITKasetsart University · THTohoku University · JPUniversity of Alabama · USUniversity of Delaware · USUniversity of Missouri · USUniversity of Reggio Calabria · ITYunnan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sex chromosomes evolved from autosomes many times across the eukaryote phylogeny. Several models have been proposed to explain this transition, some involving male and female sterility mutations linked in a region of suppressed recombination between X and Y (or Z/W, U/V) chromosomes. Comparative and experimental analysis of a reference genome assembly for a double haploid YY male garden asparagus (Asparagus officinalis L.) individual implicates separate but linked genes as responsible for sex determination. Dioecy has evolved recently within Asparagus and sex chromosomes are cytogenetically identical with the Y, harboring a megabase segment that is missing from the X. We show that deletion of this entire region results in a male-to-female conversion, whereas loss of a single suppressor of female development drives male-to-hermaphrodite conversion. A single copy anther-specific gene with a male sterile Arabidopsis knockout phenotype is also in the Y-specific region, supporting a two-gene model for sex chromosome evolution.

Indexed as

ArabidopsisAsparagus PlantChromosomes, PlantEvolution, MolecularGenome, PlantHermaphroditic OrganismsPlant InfertilitySex ChromosomesSex Determination Processes

Identifiers

PMID29093472
PMCPMC5665984
OpenAlexW2766327274

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.