Evidence map›Paper›PMID 29093092›Full record

ArticleJournal of virology2018

Isolation and Characterization of vΔI3 Confirm that Vaccinia Virus SSB Plays an Essential Role in Viral Replication.

Matthew D Greseth, Maciej W Czarnecki, Matthew S Bluma, Paula Traktman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.1field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Poxvirus Recombination.Pathogens (Basel, Switzerland) · 2022
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Matthew D Greseth *Departments of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, USA.
Maciej W Czarnecki *Departments of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, USA.
Matthew S BlumaDepartment of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Paula TraktmanDepartments of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, South Carolina, USA traktman@musc.edu.
Medical University of South Carolina · USMedical College of Wisconsin · US

Funding

VACCINIA DNA REPLICATION: GENETICS AND MOLECULAR BIOLOGYR01AI021758 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI TRAKTMAN, PAULA · 1985 to 2016
$5.8M
Vaccina DNA ReplicationR01GM131412 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI TRAKTMAN, PAULA · 2018 to 2021
$1.5M
NIAID NIH HHS R01 AI021758NIGMS NIH HHS R01 GM131412
6 · The paper itself

Abstract

Vaccinia virus is unusual among DNA viruses in replicating exclusively in the cytoplasm of infected cells. The single-stranded DNA (ssDNA) binding protein (SSB) I3 is among the replication machinery encoded by the 195-kb genome, although direct genetic analysis of I3 has been lacking. Herein, we describe a complementing cell line (CV1-I3) that fully supports the replication of a null virus (vΔI3) lacking the I3 open reading frame (ORF). In noncomplementing CV1-CAT cells, vΔI3 shows a severe defect in the production of infectious virus (≥200-fold reduction). Early protein synthesis and core disassembly occur normally. However, DNA replication is profoundly impaired (≤0.2% of wild-type [WT] levels), and late proteins do not accumulate. When several other noncomplementing cell lines are infected with vΔI3, the yield of infectious virus is also dramatically reduced (168- to 1,776-fold reduction). Surprisingly, the residual levels of DNA accumulation vary from 1 to 12% in the different cell lines (CV1-CAT < A549 < BSC40 < HeLa); however, any nascent DNA that can be detected is subgenomic in size. Although this subgenomic DNA supports late protein expression, it does not support the production of infectious virions. Electron microscopy (EM) analysis of vΔI3-infected BSC40 cells reveals that immature virions are abundant but no mature virions are observed. Aberrant virions characteristic of a block to genome encapsidation are seen instead. Finally, we demonstrate that a CV1 cell line encoding a previously described I3 variant with impaired ssDNA binding activity is unable to complement vΔI3. This report provides definitive evidence that the vaccinia virus I3 protein is the replicative SSB and is essential for productive viral replication.

Indexed as

Sequence DeletionVirus ReplicationCell LineDNA-Binding ProteinsDNA ReplicationDNA, Single-StrandedGene ExpressionGene Expression Regulation, ViralGenetic Complementation TestHumansPoxviridaeVacciniaVaccinia virusViral ProteinsDNA-Binding ProteinsDNA, Single-StrandedI3 protein, Vaccinia virusViral Proteinscomplementing cell linedeletion virusDNA replicationI3molecular geneticspoxvirusSSBvaccinia virus

Identifiers

PMID29093092
PMCPMC5752924
OpenAlexW2765947814

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.