Evidence map›Paper›PMID 29092960›Full record

ArticleJournal of lipid research2018

Quantification of 3-ketodihydrosphingosine using HPLC-ESI-MS/MS to study SPT activity in yeast

Jihui Ren, Justin Snider, Michael V Airola, Aaron Zhong, Nadia A Rana, Lina M Obeid, Yusuf A Hannun

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Mass Spectrometric Analysis of Bioactive Sphingolipids in Fungi.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Monitoring the SphingolipidFrontiers in cell and developmental biology · 2019
    Article
  13. Tsc3 regulates SPT amino acid choice inJournal of lipid research · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jihui RenDepartments of Medicine Stony Brook University, Stony Brook, NY 11794.
Justin SniderDepartments of Medicine Stony Brook University, Stony Brook, NY 11794.
Michael V AirolaBiochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794.
Aaron ZhongDepartments of Medicine Stony Brook University, Stony Brook, NY 11794.
Nadia A RanaDepartments of Medicine Stony Brook University, Stony Brook, NY 11794.
Lina M ObeidDepartments of Medicine Stony Brook University, Stony Brook, NY 11794.
Yusuf A HannunBiochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794 Yusuf.Hannun@stonybrookmedicine.edu.
Stony Brook University · USNorthport VA Medical Center · US

Funding

Sphingolipids in Cancer Therapy and AngiogenesisP01CA097132 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI Daniel Canals · 2003 to 2026
$30.8M
Neutral Sphingomyelinases and Bioactive CeramidesR35GM118128 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HANNUN, YUSUF AWNI · 2016 to 2025
$7.9M
Establishing Signaling and Biological Function of Novel Sphingolipids in YeastF32GM108384 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI RANA, NADIA A. · 2014 to 2015
$69k
NCI NIH HHS P01 CA097132NIGMS NIH HHS F32 GM108384NIGMS NIH HHS R35 GM118128
6 · The paper itself

Abstract

Serine palmitoyltransferase (SPT) catalyzes the rate-limiting step of condensation of L-serine and palmitoyl-CoA to form 3-ketodihydrosphingosine (3KDS). Here, we report a HPLC-ESI-MS/MS method to directly quantify 3KDS generated by SPT. With this technique, we were able to detect 3KDS at a level comparable to that of dihydrosphingosine in yeast

Indexed as

Chromatography, High Pressure LiquidFatty Acids, MonounsaturatedSaccharomyces cerevisiaeSerine C-PalmitoyltransferaseSpectrometry, Mass, Electrospray IonizationSphingosineTandem Mass SpectrometryFatty Acids, MonounsaturatedketodihydrosphingosineSerine C-PalmitoyltransferaseSphingosinethermozymocidinhigh-performance liquid chromatography-electrospray ionization-tandem mass spectrometryserine palmitoyltransferasesphingolipids

Identifiers

PMID29092960
PMCPMC5748491
OpenAlexW2781971103

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.