Evidence map›Paper›PMID 29092957›Full record

ArticleCold Spring Harbor molecular case studies2018

Molecular characterization of metastatic pancreatic neuroendocrine tumors (PNETs) using whole-genome and transcriptome sequencing.

Hui-Li Wong, Kevin C Yang, Yaoqing Shen, Eric Y Zhao, Jonathan M Loree, Hagen F Kennecke, Steve E Kalloger, Joanna M Karasinska, Howard J Lim, Andrew J Mungall and 11 more

Registry-linked trialOpen access · diamondAbstract readCase Reports
In one paragraph

Article in Cold Spring Harbor molecular case studies, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02155621 (Personalized OncoGenomics), which is not on this map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02155621 narecruitingnot on this map

Personalized OncoGenomics (POG) Program of British Columbia: Connecting Cancer Genomics to Cancer Care

TypeinterventionalSponsorBritish Columbia Cancer AgencyRan2014 to 2026Enrolled5,000ConditionsMetastatic Cancers, Advanced Cancers, Cancers That Cannot be Treated With Curative IntentArmsGenome sequencing
3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Menin in Cancer.Genes · 2024
    Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Improved structural variant interpretation for hereditary cancer susceptibility using long-read sequencing.Genetics in medicine : official journal of the American College of Medical Genetics · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 1 country.

Hui-Li Wong *Division of Medical Oncology, BC Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.ORCID 0000-0003-3803-2107
Kevin C Yang *Department of Molecular Biology and Biochemistry, Simon Fraser University, Vancouver, British Columbia V5A 1S6, Canada.
Yaoqing Shen *Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4S6, Canada.
Eric Y ZhaoCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4S6, Canada.
Jonathan M LoreeDivision of Medical Oncology, BC Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.
Hagen F KenneckeDivision of Medical Oncology, BC Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.
Steve E KallogerPancreas Centre BC, Vancouver, British Columbia V5Z 4E6, Canada.
Joanna M KarasinskaPancreas Centre BC, Vancouver, British Columbia V5Z 4E6, Canada.
Howard J LimDivision of Medical Oncology, BC Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.
Andrew J MungallCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4S6, Canada.
Xiaolan FengVancouver Island Centre, British Columbia Cancer Agency, Vancouver, British Columbia V8R 6V5, Canada.
Janine M DaviesDivision of Medical Oncology, BC Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.
Kasmintan SchraderDepartment of Medical Genetics, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada.
Chen ZhouCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4S6, Canada.
Aly KarsanCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4S6, Canada.
Steven J M JonesDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Vancouver, British Columbia V5A 1S6, Canada.
Janessa LaskinDivision of Medical Oncology, BC Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.
Marco A MarraCanada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 4S6, Canada.
David F SchaefferPancreas Centre BC, Vancouver, British Columbia V5Z 4E6, Canada.
Sharon M GorskiDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Vancouver, British Columbia V5A 1S6, Canada.
Daniel J RenoufDivision of Medical Oncology, BC Cancer Agency, Vancouver, British Columbia V5Z 4E6, Canada.
BC Cancer Agency · CACanada's Michael Smith Genome Sciences Centre · CAUniversity of British Columbia · CASimon Fraser University · CAVancouver General Hospital · CAPancreas Centre (Canada) · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pancreatic neuroendocrine tumors (PNETs) are a genomically and clinically heterogeneous group of pancreatic neoplasms often diagnosed with distant metastases. Recurrent somatic mutations, chromosomal aberrations, and gene expression signatures in PNETs have been described, but the clinical significance of these molecular changes is still poorly understood, and the clinical outcomes of PNET patients remain highly variable. To help identify the molecular factors that contribute to PNET progression and metastasis, and as part of an ongoing clinical trial at the BC Cancer Agency (clinicaltrials.gov ID: NCT02155621), the genomic and transcriptomic profiles of liver metastases from five patients (four PNETs and one neuroendocrine carcinoma) were analyzed. In four of the five cases, we identified biallelic loss of

Indexed as

Whole Genome SequencingAdultAgedFatal OutcomeFemaleHumansMaleMiddle AgedNeoplasm MetastasisNeuroendocrine TumorsPancreatic NeoplasmsTranscriptomeTreatment Outcomeneoplasm of the gastrointestinal tractneuroendocrine neoplasm

Identifiers

PMID29092957
PMCPMC5793777
OpenAlexW2766372044

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.