Evidence map›Paper›PMID 29092947›Full record

ArticleCancer research2017

An Image Analysis Resource for Cancer Research: PIIP-Pathology Image Informatics Platform for Visualization, Analysis, and Management.

Anne L Martel, Dan Hosseinzadeh, Caglar Senaras, Yu Zhou, Azadeh Yazdanpanah, Rushin Shojaii, Emily S Patterson, Anant Madabhushi, Metin N Gurcan

Abstract read
In one paragraph

Article in Cancer research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Machine learning in renal pathology.Frontiers in nephrology · 2022
    Article
  13. Article
  14. Article
  15. Harnessing non-destructive 3D pathology.Nature biomedical engineering · 2021
    Review
  16. Machine learning techniques for mitoses classification.Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society · 2021
    Article
  17. Article
  18. AI in Medical Imaging Informatics: Current Challenges and Future Directions.IEEE journal of biomedical and health informatics · 2020
    Article
  19. MLCD: A Unified Software Package for Cancer Diagnosis.JCO clinical cancer informatics · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Anne L MartelSunnybrook Research Institute, Toronto, Canada. Anne.martel@sri.utoronto.ca.
Dan HosseinzadehPathcore Inc., Toronto, Canada.
Caglar SenarasThe Ohio State University, Columbus, Ohio.
Yu ZhouCase Western Reserve University, Cleveland, Ohio.
Azadeh YazdanpanahSunnybrook Research Institute, Toronto, Canada.
Rushin ShojaiiSunnybrook Research Institute, Toronto, Canada.
Emily S PattersonThe Ohio State University, Columbus, Ohio.
Anant MadabhushiCase Western Reserve University, Cleveland, Ohio.
Metin N GurcanThe Ohio State University, Columbus, Ohio.

Funding

Pathology Image Informatics Platform for visualization, analysis and managementU24CA199374 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GURCAN, METIN NAFI, MADABHUSHI, ANANT · 2015 to 2019
$2.9M
Computer-based assessment of tumor microenvironment (TME) in Follicular LymphomaR01CA134451 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI GURCAN, METIN NAFI, LOZANSKI, GERARD · 2009 to 2017
$2.3M
NCI NIH HHS R01 CA134451NCI NIH HHS U24 CA199374
6 · The paper itself

Abstract

Pathology Image Informatics Platform (PIIP) is an NCI/NIH sponsored project intended for managing, annotating, sharing, and quantitatively analyzing digital pathology imaging data. It expands on an existing, freely available pathology image viewer, Sedeen. The goal of this project is to develop and embed some commonly used image analysis applications into the Sedeen viewer to create a freely available resource for the digital pathology and cancer research communities. Thus far, new plugins have been developed and incorporated into the platform for out of focus detection, region of interest transformation, and IHC slide analysis. Our biomarker quantification and nuclear segmentation algorithms, written in MATLAB, have also been integrated into the viewer. This article describes the viewing software and the mechanism to extend functionality by plugins, brief descriptions of which are provided as examples, to guide users who want to use this platform. PIIP project materials, including a video describing its usage and applications, and links for the Sedeen Viewer, plug-ins, and user manuals are freely available through the project web page: http://pathiip.org

Indexed as

AlgorithmsDiagnostic ImagingHumansImage Interpretation, Computer-AssistedImage Processing, Computer-AssistedInternetNeoplasmsPathology, ClinicalSoftwareUser-Computer Interface

Identifiers

PMID29092947
PMCPMC5679396

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.