Evidence map›Paper›PMID 29092938›Full record

ArticleCancer research2017

P-MartCancer-Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets.

Bobbie-Jo M Webb-Robertson, Lisa M Bramer, Jeffrey L Jensen, Markus A Kobold, Kelly G Stratton, Amanda M White, Karin D Rodland

Abstract read
In one paragraph

Article in Cancer research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Itaconic acid production is regulated by LaeA inMetabolic engineering communications · 2022
    Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bobbie-Jo M Webb-RobertsonPacific Northwest National Laboratory, Richland, Washington. bj@pnnl.gov.
Lisa M BramerPacific Northwest National Laboratory, Richland, Washington.
Jeffrey L JensenPacific Northwest National Laboratory, Richland, Washington.
Markus A KoboldPacific Northwest National Laboratory, Richland, Washington.
Kelly G StrattonPacific Northwest National Laboratory, Richland, Washington.
Amanda M WhitePacific Northwest National Laboratory, Richland, Washington.
Karin D RodlandPacific Northwest National Laboratory, Richland, Washington.

Funding

Interactive Informatics Resource for Research-driven Cancer ProteomicsU01CA184783 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI WEBB-ROBERTSON, BOBBIE-JO MARY · 2014 to 2016
$1.3M
NCI NIH HHS U01 CA184783
6 · The paper itself

Abstract

P-MartCancer is an interactive web-based software environment that enables statistical analyses of peptide or protein data, quantitated from mass spectrometry-based global proteomics experiments, without requiring in-depth knowledge of statistical programming. P-MartCancer offers a series of statistical modules associated with quality assessment, peptide and protein statistics, protein quantification, and exploratory data analyses driven by the user via customized workflows and interactive visualization. Currently, P-MartCancer offers access and the capability to analyze multiple cancer proteomic datasets generated through the Clinical Proteomics Tumor Analysis Consortium at the peptide, gene, and protein levels. P-MartCancer is deployed as a web service (https://pmart.labworks.org/cptac.html), alternatively available via Docker Hub (https://hub.docker.com/r/pnnl/pmart-web/).

Indexed as

InternetProteomicsSoftwareDatasets as TopicGene Expression Regulation, NeoplasticMass SpectrometryNeoplasmsPeptidesProteinsPeptidesProteins

Identifiers

PMID29092938
PMCPMC5679244

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.