Evidence map›Paper›PMID 29091442›Full record

ArticleJournal of the American Chemical Society2017

Spatially Heterogeneous Surface Water Diffusivity around Structured Protein Surfaces at Equilibrium.

Ryan Barnes, Sheng Sun, Yann Fichou, Frederick W Dahlquist, Matthias Heyden, Songi Han

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Water-directed pinning is key to tau prion formation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Impact of water models on the structure and dynamics of enzyme tunnels.Computational and structural biotechnology journal · 2024
    Article
  7. Article
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  18. Review
  19. Article
  20. Affinity of small-molecule solutes to hydrophobic, hydrophilic, and chemically patterned interfaces in aqueous solution.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ryan BarnesDepartment of Chemistry and Biochemistry, University of California, Santa Barbara , Santa Barbara, California 93106, United States.
Sheng SunDepartment of Chemistry and Biochemistry, University of California, Santa Barbara , Santa Barbara, California 93106, United States.
Yann FichouDepartment of Chemistry and Biochemistry, University of California, Santa Barbara , Santa Barbara, California 93106, United States.
Frederick W DahlquistDepartment of Chemistry and Biochemistry, University of California, Santa Barbara , Santa Barbara, California 93106, United States.
Matthias HeydenMax-Planck-Institut für Kohlenforschung , 45470 Mülheim an der Ruhr, Germany.ORCID 0000-0002-7956-5287
Songi HanDepartment of Chemistry and Biochemistry, University of California, Santa Barbara , Santa Barbara, California 93106, United States.ORCID 0000-0002-7976-0699
University of California, Santa Barbara · USMax-Planck-Institut für Kohlenforschung · DE

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
MECHANISTIC STUDIES OF BACTERIAL CHEMOTAXISR01GM059544 · NIGMS · UNIVERSITY OF OREGON · PI DAHLQUIST, FREDERICK W. · 1999 to 2018
$4.8M
T4 LYSOZYME AS A MODEL FOR PROTEIN STABILITYR01GM057766 · NIGMS · UNIVERSITY OF OREGON · PI DAHLQUIST, FREDERICK W · 1998 to 2005
$1.4M
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R01 GM057766NIGMS NIH HHS R01 GM059544
6 · The paper itself

Abstract

Hydration water on the surface of a protein is thought to mediate the thermodynamics of protein-ligand interactions. For hydration water to play a role beyond modulating global protein solubility or stability, the thermodynamic properties of hydration water must reflect on the properties of the heterogeneous protein surface and thus spatially vary over the protein surface. A potent read-out of local variations in thermodynamic properties of hydration water is its equilibrium dynamics spanning picosecond to nanosecond time scales. In this study, we employ Overhauser dynamic nuclear polarization (ODNP) to probe the equilibrium hydration water dynamics at select sites on the surface of Chemotaxis Y (CheY) in dilute solution. ODNP reports on site-specific hydration water dynamics within 5-10 Å of a label tethered to the biomolecular surface on two separate time scales of motion, corresponding to diffusive water (DW) and protein-water coupled motions, referred to as bound water (BW). We find DW dynamics to be highly heterogeneous across the surface of CheY. We identify a significant correlation between DW dynamics and the local hydropathy of the CheY protein surface, empirically determined by molecular dynamics (MD) simulations, and find the more hydrophobic sites to be hydrated with slower diffusing water. Furthermore, we compare the hydration water dynamics on different polypeptides and liposome surfaces and find the DW dynamics on globular proteins to be significantly more heterogeneous than on intrinsically disordered proteins (IDPs), peptides, and liposomes. The heterogeneity in the hydration water dynamics suggests that structured proteins have the capacity to encode information into the surrounding hydration shell.

Indexed as

ThermodynamicsDiffusionEscherichia coli ProteinsHydrophobic and Hydrophilic InteractionsMethyl-Accepting Chemotaxis ProteinsMolecular Dynamics SimulationWatercheY protein, E coliEscherichia coli ProteinsMethyl-Accepting Chemotaxis ProteinsWater

Identifiers

PMID29091442
PMCPMC6021025
OpenAlexW2765370012

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.