Evidence map›Paper›PMID 29089633›Full record

ArticleScientific reports2017

Physiological and transcriptome response to cadmium in cosmos (Cosmos bipinnatus Cav.) seedlings.

Yujing Liu, Xiaofang Yu, Yimei Feng, Chao Zhang, Chao Wang, Jian Zeng, Zhuo Huang, Houyang Kang, Xing Fan, Lina Sha and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 49 citations in OpenAlex.

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  12. Combined Effect of Cadmium and Lead on Durum Wheat.International journal of molecular sciences · 2019
    Article
  13. Transcriptome Analysis Reveals Cotton (International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Yujing LiuLandscape Architecture, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Xiaofang YuLandscape Architecture, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China. xiaofangyu@sicau.edu.cn.
Yimei FengLandscape Architecture, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Chao ZhangIndustrial Crop Research Institute of Sichuan Academy of Agricultural Sciences, Qingbaijiang, 610300, Sichuan, China.
Chao WangTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Jian ZengCollege of Resources, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Zhuo HuangLandscape Architecture, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Houyang KangTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Xing FanTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Lina ShaTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Haiqin ZhangTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Yonghong ZhouTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Suping GaoLandscape Architecture, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Qibing ChenLandscape Architecture, Sichuan Agricultural University, Wenjiang, 611130, Sichuan, China.
Sichuan Agricultural University · CNSichuan Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To date, several species of Asteraceae have been considered as Cd-accumulators. However, little information on the Cd tolerance and associated mechanisms of Asteraceae species Cosmos bipinnatus, is known. Presently, several physiological indexes and transcriptome profiling under Cd stress were investigated. C. bipinnatus exhibited strong Cd tolerance and recommended as a Cd-accumulator, although the biomasses were reduced by Cd. Meanwhile, Cd stresses reduced Zn and Ca uptake, but increased Fe uptake. Subcellular distribution indicated that the vacuole sequestration in root mainly detoxified Cd under lower Cd stress. Whilst, cell wall binding and vacuole sequestration in root co-detoxified Cd under high Cd exposure. Meanwhile, 66,407 unigenes were assembled and 41,674 (62.75%) unigenes were annotated in at least one database. 2,658 DEGs including 1,292 up-regulated unigenes and 1,366 down-regulated unigenes were identified under 40 μmol/L Cd stress. Among of these DEGs, ZIPs, HMAs, NRAMPs and ABC transporters might participate in Cd uptake, translocation and accumulation. Many DEGs participating in several processes such as cell wall biosynthesis, GSH metabolism, TCA cycle and antioxidant system probably play critical roles in cell wall binding, vacuole sequestration and detoxification. These results provided a novel insight into the physiological and transcriptome response to Cd in C. bipinnatus seedlings.

Indexed as

Adenosine TriphosphatasesAsteraceaeBiomassCadmiumCell WallGene Expression ProfilingGene Expression Regulation, PlantLeucine ZippersPlant ProteinsPlant RootsSeedlingsSerine EndopeptidasesStress, PhysiologicalTranscriptomeVacuolesAdenosine TriphosphatasesCadmiumPlant ProteinsSerine Endopeptidases

Identifiers

PMID29089633
PMCPMC5665871
OpenAlexW2765605757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.