Evidence map›Paper›PMID 29089374›Full record

ArticleThe Journal of experimental medicine2017

Autophagy protein ATG16L1 prevents necroptosis in the intestinal epithelium.

Yu Matsuzawa-Ishimoto, Yusuke Shono, Luis E Gomez, Vanessa M Hubbard-Lucey, Michael Cammer, Jessica Neil, M Zahidunnabi Dewan, Sophia R Lieberman, Amina Lazrak, Jill M Marinis and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 200 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
200citing papers in PubMed, 4 pooled it
17.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

200 citing papers in PubMed, 4 syntheses or guidelines pooled it, 287 citations in OpenAlex.

  1. Pooled it
  2. Role of Mitochondria in Inflammatory Bowel Diseases: A Systematic Review.International journal of molecular sciences · 2023
    Pooled it
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140 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Yu Matsuzawa-IshimotoKimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, New York, NY.
Yusuke ShonoDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID http://orcid.org/0000-0002-0459-1659
Luis E GomezKimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, New York, NY.
Vanessa M Hubbard-LuceyKimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, New York, NY.
Michael CammerMicroscopy Core, Office of Collaborative Science, New York University School of Medicine, New York, NY.ORCID http://orcid.org/0000-0003-4930-1739
Jessica NeilKimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, New York, NY.
M Zahidunnabi DewanHistopathology Core, Office of Collaborative Science, New York University School of Medicine, New York, NY.
Sophia R LiebermanDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID http://orcid.org/0000-0002-8112-4667
Amina LazrakDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.
Jill M MarinisPattern Recognition Receptor Discovery Performance Unit, Immuno-Inflammation Therapeutic Area, GlaxoSmithKline, Collegeville, PA.
Allison BealPattern Recognition Receptor Discovery Performance Unit, Immuno-Inflammation Therapeutic Area, GlaxoSmithKline, Collegeville, PA.ORCID http://orcid.org/0000-0001-5600-3380
Philip A HarrisPattern Recognition Receptor Discovery Performance Unit, Immuno-Inflammation Therapeutic Area, GlaxoSmithKline, Collegeville, PA.ORCID http://orcid.org/0000-0002-5189-3326
John BertinPattern Recognition Receptor Discovery Performance Unit, Immuno-Inflammation Therapeutic Area, GlaxoSmithKline, Collegeville, PA.
Chen LiuDepartments of Pathology and Laboratory Medicine, New Jersey Medical School and Robert Wood Johnson Medical School, Rutgers University, Newark, NJ.
Yi DingDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, NY.
Marcel R M van den BrinkDepartment of Immunology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY vandenbm@mskcc.org.ORCID http://orcid.org/0000-0003-0696-4401
Ken CadwellKimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, New York, NY ken.cadwell@med.nyu.edu.ORCID http://orcid.org/0000-0002-5860-0661
New York University · USGlaxoSmithKline (United States) · USMemorial Sloan Kettering Cancer Center · USRutgers, The State University of New Jersey · USUniversity of Rochester Medical Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Diabetes, Digestive, and Kidney Diseases Extramural ResearchR01DK093668 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2011 to 2026
$7.3M
Strategies to enhance immune reconstitution after bone marrow transplantR01HL069929 · NHLBI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI VAN DEN BRINK, MARCEL R M · 2002 to 2015
$7.0M
Redefining the role of autophagy in bacterial diseaseR01AI121244 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2017 to 2026
$5.6M
The role of autophagy gene Atg16L1 in allogeneic hematopoietic stem cell transplantation - Resubmission - 1R01HL123340 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CADWELL, KEN HASHIGIWA, VAN DEN BRINK, MARCEL R M · 2015 to 2022
$5.2M
Strategies to Enhance Lymphoid Recovery After Radiation-Induced InjuryR01AI080455 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2008 to 2012
$2.6M
IL-22 in Thymic RegenerationR01AI101406 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2012 to 2016
$2.5M
Mucosal Immunity and Microbiota in Intestinal Graft-versus-Host DiseaseR01AI100288 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI VAN DEN BRINK, MARCEL R M · 2012 to 2016
$2.2M
Role of Nod2 in preventing intestinal disease downstream of microbial imbalancesR01DK103788 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CADWELL, KEN HASHIGIWA, LOKE, PNG · 2015 to 2017
$1.3M
Inverted two photon laser scanning microscope for host defenseS10RR023704 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DUSTIN, MICHAEL LORAN · 2008 to 2008
$500k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016087NCRR NIH HHS S10 RR023704NHLBI NIH HHS R01 HL069929NHLBI NIH HHS R01 HL123340NIAID NIH HHS R01 AI080455NIAID NIH HHS R01 AI100288NIAID NIH HHS R01 AI101406NIAID NIH HHS R01 AI121244NIDDK NIH HHS R01 DK093668NIDDK NIH HHS R01 DK103788
6 · The paper itself

Abstract

A variant of the autophagy gene

Indexed as

ApoptosisAutophagyAnimalsAutophagy-Related ProteinsCaliciviridae InfectionsCarrier ProteinsCell SurvivalCytoprotectionEpithelial CellsGene DeletionGraft vs Host DiseaseHematopoietic Stem Cell TransplantationHomeostasisIntestinal MucosaMiceMice, Inbred C57BLAtg16l1 protein, mouseAutophagy-Related ProteinsCarrier ProteinsReceptor-Interacting Protein Serine-Threonine KinasesRipk1 protein, mouseTumor Necrosis Factor-alpha

Identifiers

PMID29089374
PMCPMC5716041
OpenAlexW2913465139

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.