Evidence map›Paper›PMID 29087375›Full record

ArticleThe ISME journal2018

In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina.

Lars Behrendt, Jean-Baptiste Raina, Adrian Lutz, Witold Kot, Mads Albertsen, Per Halkjær-Nielsen, Søren J Sørensen, Anthony Wd Larkum, Michael Kühl

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Lars BehrendtDepartment of Civil, Environmental and Geomatic Engineering, Swiss Federal Institute of Technology, Zürich, Switzerland. Behrendt.l@gmail.com.ORCID http://orcid.org/0000-0002-8988-2032
Jean-Baptiste RainaPlant Functional Biology and Climate Change Cluster (C3), University of Technology, Sydney, New South Wales, Australia.
Adrian LutzMetabolomics Australia, School of BioSciences, University of Melbourne, Parkville, Victoria, Australia.
Witold KotDepartment of Environmental Science-Enviromental Microbiology and Biotechnology, Aarhus University, Roskilde, Denmark.
Mads AlbertsenDepartment of Chemistry and Bioscience, Center for Microbial Communities, Aalborg University, Aalborg, Denmark.ORCID http://orcid.org/0000-0002-6151-190X
Per Halkjær-NielsenDepartment of Chemistry and Bioscience, Center for Microbial Communities, Aalborg University, Aalborg, Denmark.
Søren J SørensenDepartment of Biology, Microbiology Section, University of Copenhagen, Copenhagen, Denmark.
Anthony Wd LarkumPlant Functional Biology and Climate Change Cluster (C3), University of Technology, Sydney, New South Wales, Australia.
Michael KühlDepartment of Biology, Marine Biological Section, University of Copenhagen, Helsingør, Denmark.
University of Technology Sydney · AUAalborg University · DKUniversity of Copenhagen · DKAarhus University · DKThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tropical ascidian Lissoclinum patella hosts two enigmatic cyanobacteria: (1) the photoendosymbiont Prochloron spp., a producer of valuable bioactive compounds and (2) the chlorophyll-d containing Acaryochloris spp., residing in the near-infrared enriched underside of the animal. Despite numerous efforts, Prochloron remains uncultivable, restricting the investigation of its biochemical potential to cultivation-independent techniques. Likewise, in both cyanobacteria, universally important parameters on light-niche adaptation and in situ photosynthetic regulation are unknown. Here we used genome sequencing, transcriptomics and metabolomics to investigate the symbiotic linkage between host and photoendosymbiont and simultaneously probed the transcriptional response of Acaryochloris in situ. During high light, both cyanobacteria downregulate CO

Identifiers

PMID29087375
PMCPMC5776471
OpenAlexW2767194449

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.