Evidence map›Paper›PMID 29087317›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation.

Jérémie Bazin, Katja Baerenfaller, Sager J Gosai, Brian D Gregory, Martin Crespi, Julia Bailey-Serres

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 221 citations in OpenAlex.

  1. Review
  2. Ribosome stalling position, spacing, and A-site occupancy impact translation and cotranslational mRNA decay in plants.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. RNA regulation in plants.Science China. Life sciences · 2026
    Review
  5. Review
  6. Article
  7. Evaluating the reliability of tools for mRNA annotation and IRES studies.bioRxiv : the preprint server for biology · 2026
    Article
  8. Review
  9. Article
  10. Article
  11. Plant microRNA maturation and function.Nature reviews. Molecular cell biology · 2026
    Review
  12. Translational landscape during seed germination revealed by ribosome profiling.The Plant journal : for cell and molecular biology · 2026
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. TheGenome research · 2025
    Article
  18. Review
  19. Mechanisms suppressing noncoding translation.Trends in cell biology · 2025
    Review
  20. Plant ADH1 promoter acts as an H3K27me3-associated hyper-long cold-responsive promoter.The Plant journal : for cell and molecular biology · 2025
    Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Jérémie BazinCenter for Plant Cell Biology, University of California, Riverside, CA 92521.
Katja BaerenfallerDepartment of Biology, Eidgenössiche Technische Hochschule, 8092 Zurich, Switzerland.
Sager J GosaiDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104.
Brian D GregoryDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104.
Martin CrespiInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Paris-Saclay, 91405 Orsay, France.
Julia Bailey-SerresCenter for Plant Cell Biology, University of California, Riverside, CA 92521; serres@ucr.edu.
University of Pennsylvania · USBoard of the Swiss Federal Institutes of Technology · CHInstitut des Sciences des Plantes de Paris Saclay · FRUniversité Paris-Sud · FRUniversity of California, Riverside · US

Funding

Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
NIH HHS S10 OD016290
6 · The paper itself

Abstract

Eukaryotic transcriptomes contain a major non-protein-coding component that includes precursors of small RNAs as well as long noncoding RNA (lncRNAs). Here, we utilized the mapping of ribosome footprints on RNAs to explore translational regulation of coding and noncoding RNAs in roots of

Indexed as

ArabidopsisGene Expression ProfilingGene Expression Regulation, PlantMutationOpen Reading FramesPhosphatesPlant RootsProtein BiosynthesisRibosomesRNA, Long NoncodingRNA, MessengerRNA, UntranslatedSeedlingsStarvationTranscriptomePhosphatesRNA, Long NoncodingRNA, MessengerRNA, UntranslatedArabidopsis thalianalong noncoding RNAphosphate deficiencyribosome footprint profilingsmall peptides

Identifiers

PMID29087317
PMCPMC5699049
OpenAlexW2765569052

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.