Evidence map›Paper›PMID 29087175›Full record

ArticleACS chemical biology2017

Global Awakening of Cryptic Biosynthetic Gene Clusters in Burkholderia thailandensis.

Ashish Gupta, Renesh Bedre, Sudarshan Singh Thapa, Afsana Sabrin, Guannan Wang, Maheshi Dassanayake, Anne Grove

Erratum issuedAbstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

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  7. Transcription Factor PecS MediatesJournal of bacteriology · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ashish GuptaDepartment of Biological Sciences, ‡School of Plant, Environmental and Soil Sciences, Louisiana State University , Baton Rouge, Louisiana 70803, United States.ORCID 0000-0002-1800-2755
Renesh BedreDepartment of Biological Sciences, ‡School of Plant, Environmental and Soil Sciences, Louisiana State University , Baton Rouge, Louisiana 70803, United States.
Sudarshan Singh ThapaDepartment of Biological Sciences, ‡School of Plant, Environmental and Soil Sciences, Louisiana State University , Baton Rouge, Louisiana 70803, United States.
Afsana SabrinDepartment of Biological Sciences, ‡School of Plant, Environmental and Soil Sciences, Louisiana State University , Baton Rouge, Louisiana 70803, United States.
Guannan WangDepartment of Biological Sciences, ‡School of Plant, Environmental and Soil Sciences, Louisiana State University , Baton Rouge, Louisiana 70803, United States.
Maheshi DassanayakeDepartment of Biological Sciences, ‡School of Plant, Environmental and Soil Sciences, Louisiana State University , Baton Rouge, Louisiana 70803, United States.
Anne GroveDepartment of Biological Sciences, ‡School of Plant, Environmental and Soil Sciences, Louisiana State University , Baton Rouge, Louisiana 70803, United States.ORCID 0000-0002-4390-0354
Louisiana State University · US

Funding

Bacterial gene regulation in response to oxidative stressR15GM107825 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI GROVE, ANNE · 2013 to 2013
$318k
NIGMS NIH HHS R15 GM107825
6 · The paper itself

Abstract

Many bacteria encode biosynthetic proteins that produce a vast array of natural products. These compounds are often synthesized during host invasion as they function as virulence factors. In addition, such secondary metabolites have yielded numerous molecular scaffolds with pharmaceutical and clinical importance. The gene clusters that encode proteins responsible for synthesis of these compounds are typically silenced or "cryptic" under laboratory growth conditions, hampering discovery of novel lead compounds. We report here that MftR is a global repressor of secondary metabolite synthesis in Burkholderia thailandensis and that urate functions as a physiologically relevant inducer of gene expression. Biosynthetic gene clusters under MftR control include those associated with production of the antimicrobial bactobolins, the iron siderophore malleobactin, and the virulence factor malleilactone. MftR also controls additional genes associated with survival in a host environment, such as genes encoding components of the type III secretion system (T3SS) and proteins linked to anaerobic respiration. This observation not only has implications for understanding activation of gene regulatory networks during host invasion, but it also paves the way for isolation of novel therapeutic leads.

Indexed as

Bacterial ProteinsBiosynthetic PathwaysBurkholderiaGene Expression Regulation, BacterialGenome, BacterialMultigene FamilyBacterial Proteins

Identifiers

PMID29087175
PMCPMC5732026
OpenAlexW2766930468

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.