Evidence map›Paper›PMID 29086562›Full record

ArticleThe journal of physical chemistry. B2017

Molecular Dynamics Simulations of the [2Fe-2S] Cluster-Binding Domain of NEET Proteins Reveal Key Molecular Determinants That Induce Their Cluster Transfer/Release.

Luca Pesce, Vania Calandrini, Henri-Baptiste Marjault, Colin H Lipper, Gulia Rossetti, Ron Mittler, Patricia A Jennings, Andreas Bauer, Rachel Nechushtai, Paolo Carloni

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  6. Review
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  10. The two redox states of the human NEET proteins' [2Fe-2S] clusters.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2021
    Article
  11. Article
  12. Review
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  14. The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Luca PesceComputational Biomedicine Section, Institute of Advanced Simulation IAS-5 and Institute of Neuroscience and Medicine INM-9, Forschungszentrum Jülich GmbH , 52425 Jülich, Germany.
Vania CalandriniComputational Biomedicine Section, Institute of Advanced Simulation IAS-5 and Institute of Neuroscience and Medicine INM-9, Forschungszentrum Jülich GmbH , 52425 Jülich, Germany.
Henri-Baptiste MarjaultThe Alexander Silberman Life Science Institute and the Wolfson Center for Applied Structural Biology, The Hebrew University of Jerusalem, Edmond J. Safra Campus at Givat Ram , 91904 Jerusalem, Israel.
Colin H LipperDepartments of Chemistry and Biochemistry, University of California San Diego , La Jolla, 92093 San Diego, California, United States of America.
Gulia RossettiComputational Biomedicine Section, Institute of Advanced Simulation IAS-5 and Institute of Neuroscience and Medicine INM-9, Forschungszentrum Jülich GmbH , 52425 Jülich, Germany.ORCID 0000-0002-2032-4630
Ron MittlerDepartment of Biological Sciences and BioDiscovery Institute, University of North Texas , 76203 Denton, Texas, United States of America.
Patricia A JenningsDepartments of Chemistry and Biochemistry, University of California San Diego , La Jolla, 92093 San Diego, California, United States of America.ORCID 0000-0002-7478-2223
Andreas BauerMolecular Organisation of the Brain Molecular Neuroimaging, Institute of Neuroscience and Medicine INM-2, Forschungszentrum Jülich GmbH , 52428 Jülich, Germany.
Rachel NechushtaiThe Alexander Silberman Life Science Institute and the Wolfson Center for Applied Structural Biology, The Hebrew University of Jerusalem, Edmond J. Safra Campus at Givat Ram , 91904 Jerusalem, Israel.
Paolo CarloniComputational Biomedicine Section, Institute of Advanced Simulation IAS-5 and Institute of Neuroscience and Medicine INM-9, Forschungszentrum Jülich GmbH , 52425 Jülich, Germany.
Forschungszentrum Jülich · DEHebrew University of Jerusalem · ILUniversity of California San Diego · USUniversity of North Texas · US

Funding

The New Family of NEET Proteins: 2Fe-2S Protein Mediated Health and DiseaseR01GM101467 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JENNINGS, PATRICIA A · 2012 to 2015
$1.3M
NIGMS NIH HHS R01 GM101467
6 · The paper itself

Abstract

The NEET proteins are a novel family of iron-sulfur proteins characterized by an unusual three cysteine and one histidine coordinated [2Fe-2S] cluster. Aberrant cluster release, facilitated by the breakage of the Fe-N bond, is implicated in a variety of human diseases, including cancer. Here, the molecular dynamics in the multi-microsecond timescale, along with quantum chemical calculations, on two representative members of the family (the human NAF-1 and mitoNEET proteins), show that the loss of the cluster is associated with a dramatic decrease in secondary and tertiary structure. In addition, the calculations provide a mechanism for cluster release and clarify, for the first time, crucial differences existing between the two proteins, which are reflected in the experimentally observed difference in the pH-dependent cluster reactivity. The reliability of our conclusions is established by an extensive comparison with the NMR data of the solution proteins, in part measured in this work.

Indexed as

Molecular Dynamics SimulationHumansMitochondrial ProteinsProtein ConformationQuantum TheoryRibonucleoproteinsCISD1 protein, humanMitochondrial ProteinsNAF1 protein, humanRibonucleoproteins

Identifiers

PMID29086562
PMCPMC5713697
OpenAlexW2766427273

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.