Evidence map›Paper›PMID 29086154›Full record

ArticleJournal of cheminformatics2017

Open chemistry: RESTful web APIs, JSON, NWChem and the modern web application.

Marcus D Hanwell, Wibe A de Jong, Christopher J Harris

Abstract read
In one paragraph

Article in Journal of cheminformatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. A journey from molecule to physiology andFrontiers in pharmacology · 2023
    Review
  5. Article
  6. Article
  7. An effective biomedical data migration tool from resource description framework to JSON.Database : the journal of biological databases and curation · 2019
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marcus D HanwellKitware, Inc., 28 Corporate Drive, Clifton Park, NY, 12065, USA. marcus.hanwell@kitware.com.ORCID http://orcid.org/0000-0002-5851-5272
Wibe A de JongLBNL, One Cyclotron Road, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-7114-8315
Christopher J HarrisKitware, Inc., 28 Corporate Drive, Clifton Park, NY, 12065, USA.ORCID http://orcid.org/0000-0002-1113-3728

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An end-to-end platform for chemical science research has been developed that integrates data from computational and experimental approaches through a modern web-based interface. The platform offers an interactive visualization and analytics environment that functions well on mobile, laptop and desktop devices. It offers pragmatic solutions to ensure that large and complex data sets are more accessible. Existing desktop applications/frameworks were extended to integrate with high-performance computing resources, and offer command-line tools to automate interaction-connecting distributed teams to this software platform on their own terms. The platform was developed openly, and all source code hosted on the GitHub platform with automated deployment possible using Ansible coupled with standard Ubuntu-based machine images deployed to cloud machines. The platform is designed to enable teams to reap the benefits of the connected web-going beyond what conventional search and analytics platforms offer in this area. It also has the goal of offering federated instances, that can be customized to the sites/research performed. Data gets stored using JSON, extending upon previous approaches using XML, building structures that support computational chemistry calculations. These structures were developed to make it easy to process data across different languages, and send data to a JavaScript-based web client.

Indexed as

ChemistryDataJSONNWChemSemanticWeb

Identifiers

PMID29086154
PMCPMC5662523

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.