Evidence map›Paper›PMID 29084942›Full record

ArticleNature communications2017

Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq.

Silvia Bottini, Nedra Hamouda-Tekaya, Raphael Mategot, Laure-Emmanuelle Zaragosi, Stephane Audebert, Sabrina Pisano, Valerie Grandjean, Claire Mauduit, Mohamed Benahmed, Pascal Barbry and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
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  9. Noncanonical functions of microRNAs in the nucleus.Acta biochimica et biophysica Sinica · 2024
    Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. The Multiplicity of Argonaute Complexes in Mammalian Cells.The Journal of pharmacology and experimental therapeutics · 2023
    Review
  17. PSMC3 promotes RNAi by maintaining AGO2 stability through USP14.Cellular & molecular biology letters · 2022
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Silvia BottiniINSERM U1065, C3M, Team Control of Gene Expression (10), 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France.ORCID http://orcid.org/0000-0002-0605-4646
Nedra Hamouda-TekayaINSERM U1065, C3M, Team Control of Gene Expression (10), 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France.
Raphael MategotINSERM U1065, C3M, Team Control of Gene Expression (10), 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France.
Laure-Emmanuelle ZaragosiUniversité Côte d'Azur, CNRS, IPMC, Valbonne, France.ORCID http://orcid.org/0000-0001-6747-7928
Stephane AudebertCRCM, Marseille Protéomique, Institut Paoli-Calmettes, Aix Marseille University, INSERM, CNRS, 27 bd Leï Roure, BP 30059, Marseille, 13273, France.ORCID http://orcid.org/0000-0002-9409-2588
Sabrina PisanoUniversité Côte d'Azur, CNRS, INSERM, IRCAN, Faculty of Medicine, 28 Av. Valombrose, Nice, 06107, France.
Valerie GrandjeanINSERM U1065, C3M, Team Control of Gene Expression (10), 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France.
Claire MauduitINSERM U1065, C3M, Team Control of Gene Expression (10), 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France.
Mohamed BenahmedUniversité Côte d'Azur, INSERM, C3M, 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France.
Pascal BarbryUniversité Côte d'Azur, CNRS, IPMC, Valbonne, France.ORCID http://orcid.org/0000-0001-9632-6483
Emanuela RepettoINSERM U1065, C3M, Team Control of Gene Expression (10), 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France.
Michele TrabucchiINSERM U1065, C3M, Team Control of Gene Expression (10), 151 route de St-Antoine-de-Ginestière, B.P. 2 3194, Nice, 06204, France. mtrabucchi@unice.fr.ORCID http://orcid.org/0000-0001-6885-5628
Inserm · FRCentre National de la Recherche Scientifique · FRUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is a growing body of evidence about the presence and the activity of the miRISC in the nucleus of mammalian cells. Here, we show by quantitative proteomic analysis that Ago2 interacts with the nucleoplasmic protein Sfpq in an RNA-dependent fashion. By a combination of HITS-CLIP and transcriptomic analyses, we demonstrate that Sfpq directly controls the miRNA targeting of a subset of binding sites by local binding. Sfpq modulates miRNA targeting in both nucleoplasm and cytoplasm, indicating a nucleoplasmic commitment of Sfpq-target mRNAs that globally influences miRNA modes of action. Mechanistically, Sfpq binds to a sizeable set of long 3'UTRs forming aggregates to optimize miRNA positioning/recruitment at selected binding sites, including let-7a binding to Lin28A 3'UTR. Our results extend the miRNA-mediated post-transcriptional gene silencing into the nucleoplasm and indicate that an Sfpq-dependent strategy for controlling miRNA activity takes place in cells, contributing to the complexity of miRNA-dependent gene expression control.

Indexed as

Gene SilencingRNA Processing, Post-Transcriptional3' Untranslated RegionsAnimalsArgonaute ProteinsCell Line, TumorCell NucleusGene Expression ProfilingHEK293 CellsHeLa CellsHumansMiceMicroRNAsProtein BindingPTB-Associated Splicing FactorRAW 264.7 Cells3' Untranslated RegionsAgo2 protein, mouseArgonaute ProteinsLin-28 protein, mouseMicroRNAsmirnlet7 microRNA, mousePTB-Associated Splicing FactorRNA-Binding Proteins

Identifiers

PMID29084942
PMCPMC5662751
OpenAlexW2766537551

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.