Evidence map›Paper›PMID 29084847›Full record

ArticleThe Journal of biological chemistry2017

The Sec61/SecY complex is inherently deficient in translocating intrinsically disordered proteins.

Anika Gonsberg, Sebastian Jung, Sarah Ulbrich, Andrea Origi, Anke Ziska, Michael Baier, Hans-Georg Koch, Richard Zimmermann, Konstanze F Winklhofer, Jörg Tatzelt

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Structural basis of SecA-mediated protein translocation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. Review
  3. Efficient integration of transmembrane domains depends on the folding properties of the upstream sequences.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Anika GonsbergFrom the Departments of Biochemistry of Neurodegenerative Diseases and.
Sebastian JungFrom the Departments of Biochemistry of Neurodegenerative Diseases and.
Sarah UlbrichFrom the Departments of Biochemistry of Neurodegenerative Diseases and.
Andrea Origithe Institute of Biochemistry and Molecular Biology, Faculty of Medicine, Albert-Ludwigs-University Freiburg, D-79104 Freiburg im Breisgau, Germany.
Anke Ziskathe Department of Medical Biochemistry and Molecular Biology, Saarland University, D-66421 Homburg, Germany, and.
Michael Baierthe Research Group Proteinopathies/Neurodegenerative Diseases, Centre for Biological Threats and Special Pathogens, Robert Koch-Institut, D-13353 Berlin, Germany.
Hans-Georg Kochthe Institute of Biochemistry and Molecular Biology, Faculty of Medicine, Albert-Ludwigs-University Freiburg, D-79104 Freiburg im Breisgau, Germany.
Richard Zimmermannthe Department of Medical Biochemistry and Molecular Biology, Saarland University, D-66421 Homburg, Germany, and.
Konstanze F WinklhoferMolecular Cell Biology, Institute of Biochemistry and Pathobiochemistry, Ruhr University Bochum, D-44801 Bochum, Germany.ORCID 0000-0002-7256-8231
Jörg TatzeltFrom the Departments of Biochemistry of Neurodegenerative Diseases and Joerg.Tatzelt@rub.de.ORCID 0000-0001-5017-5528
German Center for Neurodegenerative Diseases · DESaarland University · DEUniversity of Freiburg · DERobert Koch Institute · DERuhr University Bochum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

About one-quarter to nearly one-third of the proteins synthesized in the cytosol of eukaryotic cells are integrated into the plasma membrane or are secreted. Translocation of secretory proteins into the lumen of the endoplasmic reticulum or the periplasm of bacteria is mediated by a highly conserved heterotrimeric membrane protein complex denoted Sec61 in eukaryotes and SecYEG in bacteria. To evaluate a possible modulation of the translocation efficiency by secondary structures of the nascent peptide chain, we performed a comparative analysis in bacteria, yeast, and mammalian cells. Strikingly, neither the bacterial SecY nor the eukaryotic Sec61 translocon was able to efficiently transport proteins entirely composed of intrinsically disordered domains (IDDs) or β-strands. However, translocation could be restored by α-helical domains in a position- and organism-dependent manner. In bacteria, we found that the α-helical domains have to precede the IDD or β-strands, whereas in mammalian cells, C-terminally located α-helical domains are sufficient to promote translocation. Our study reveals an evolutionarily conserved deficiency of the Sec61/SecY complex to translocate IDDs and β-strands in the absence of α-helical domains. Moreover, our results may suggest that adaptive pathways co-evolved with the expansion of IDDs in the proteome of eukaryotic cells to increase the transport capacity of the Sec61 translocon.

Indexed as

Cell MembraneEndoplasmic ReticulumEscherichia coliEscherichia coli ProteinsHeLa CellsHumansMembrane ProteinsMembrane Transport ProteinsPeptidesProtein Structure, SecondaryProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSEC Translocation ChannelsEscherichia coli ProteinsMembrane ProteinsMembrane Transport ProteinsPeptidesSaccharomyces cerevisiae ProteinsSEC Translocation Channelsendoplasmic reticulum (ER)ER importintrinsically disordered proteinprionprotein secretionprotein translocationSec61SecY

Identifiers

PMID29084847
PMCPMC5766967
OpenAlexW2765908015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.