Evidence map›Paper›PMID 29084441›Full record

ArticleAIDS research and human retroviruses2018

The Spleen Is an HIV-1 Sanctuary During Combined Antiretroviral Therapy.

David J Nolan, Rebecca Rose, Patricia H Rodriguez, Marco Salemi, Elyse J Singer, Susanna L Lamers, Michael S McGrath

Open access · greenAbstract read
In one paragraph

Article in AIDS research and human retroviruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 57 citations in OpenAlex.

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  13. Pharmacology of HIV Cure: Site of Action.Clinical pharmacology and therapeutics · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David J Nolan1 BioInfoExperts LLC , Thibodaux, Louisiana.
Rebecca Rose1 BioInfoExperts LLC , Thibodaux, Louisiana.
Patricia H Rodriguez2 Department of Pathology, Immunology, and Laboratory Medicine, University of Florida , Gainesville, Florida.
Marco Salemi2 Department of Pathology, Immunology, and Laboratory Medicine, University of Florida , Gainesville, Florida.
Elyse J Singer4 University of California Los Angeles David Geffen School of Medicine , Los Angeles, California.
Susanna L Lamers1 BioInfoExperts LLC , Thibodaux, Louisiana.
Michael S McGrath5 The AIDS and Cancer Specimen Resource, University of California San Francisco , San Francisco, California.
University of Florida · USUniversity of California, Los Angeles · US

Funding

AIDS and Cancer Specimen Resource (ACSR)UM1CA181255 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jeffrey Michael Bethony, Anna Coghill · 2013 to 2026
$56.7M
NATIONAL NEUROLOGICAL AIDS BANKU24MH100929 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SINGER, ELYSE J · 2013 to 2023
$12.5M
Viral evolution in peropheral macrophages and brain during progression to AIDSR01NS063897 · NINDS · UNIVERSITY OF FLORIDA · PI SALEMI, MARCO · 2009 to 2021
$7.0M
Molecular Features of and Approach to the HIV CNS Reservoir Post cARTR01MH100984 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCGRATH, MICHAEL SHANNON · 2013 to 2017
$1.9M
NCI NIH HHS UM1 CA181255NIMH NIH HHS R01 MH100984NIMH NIH HHS U24 MH100929NINDS NIH HHS R01 NS063897
6 · The paper itself

Abstract

Combined antiretroviral therapy (cART) does not eradicate HIV, which persists for years and can re-establish replication if treatment is stopped. The current challenge is identifying those tissues harboring virus through cART. Here, we used HIV env-nef single genome sequencing and HIV gag droplet digital PCR (ddPCR) to survey 50 tissues from five subjects on cART with no detectable plasma viral load at death. The spleen most consistently contained multiple proviral and expressed sequences (4/5 participants). Spleen-derived HIV demonstrated two distinct phylogenetic patterns: multiple identical sequences, often from different tissues, as well as diverse viral sequences on long terminal branches. Our results suggested that ddPCR may overestimate the size of the tissue-based viral reservoir. The spleen, a lymphatic organ at the intersection of the immune and circulatory systems, may play a key role in viral persistence.

Indexed as

Antiretroviral Therapy, Highly ActiveAdultAgedAnti-Retroviral AgentsGenes, gagHIV-1HIV InfectionsHIV SeropositivityHumansMaleMiddle AgedPhylogenyPolymerase Chain ReactionProvirusesRNA, ViralSpleenAnti-Retroviral AgentsRNA, ViralViral ProteinsHIV evolutionlymphatic systemphylogeneticsviral reservoirs

Identifiers

PMID29084441
PMCPMC5771542
OpenAlexW2766364753

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.