Evidence map›Paper›PMID 29084256›Full record

ArticlePloS one2017

Identification and characterization of LysM effectors in Penicillium expansum.

Elena Levin, Ana Rosa Ballester, Ginat Raphael, Oleg Feigenberg, Yongsheng Liu, John Norelli, Luis Gonzalez-Candelas, Jing Ma, Christopher Dardick, Michael Wisniewski and 1 more

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Characterization of the CBM50 Gene Family inJournal of fungi (Basel, Switzerland) · 2024
    Article
  4. CgNis1's Impact on Virulence and Stress Response inInternational journal of molecular sciences · 2024
    Article
  5. Frontiers in microbiology · 2023
    Article
  6. LysM protein BdLM1 ofFrontiers in plant science · 2023
    Article
  7. Proteomic Analysis of Apple Response toJournal of fungi (Basel, Switzerland) · 2022
    Article
  8. Article
  9. Putative LysM Effectors Contribute to Fungal Lifestyle.International journal of molecular sciences · 2021
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Tal6 FromFrontiers in microbiology · 2019
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Elena LevinDepartment of Postharvest Science, ARO, the Volcani Center, Bet Dagan, Israel.ORCID http://orcid.org/0000-0001-6398-9651
Ana Rosa BallesterInstituto de Agroquímica y Tecnología de Alimentos (IATA-CSIC), Avda. Agustin Escardino, Paterna, Valencia, Spain.
Ginat RaphaelDepartment of Postharvest Science, ARO, the Volcani Center, Bet Dagan, Israel.
Oleg FeigenbergDepartment of Postharvest Science, ARO, the Volcani Center, Bet Dagan, Israel.
Yongsheng LiuSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei, China.
John NorelliAppalachian Fruit Research Station, USDA-ARS, Kearneysville, WV, United States of America.
Luis Gonzalez-CandelasInstituto de Agroquímica y Tecnología de Alimentos (IATA-CSIC), Avda. Agustin Escardino, Paterna, Valencia, Spain.
Jing MaAppalachian Fruit Research Station, USDA-ARS, Kearneysville, WV, United States of America.
Christopher DardickAppalachian Fruit Research Station, USDA-ARS, Kearneysville, WV, United States of America.
Michael WisniewskiAppalachian Fruit Research Station, USDA-ARS, Kearneysville, WV, United States of America.
Samir DrobyDepartment of Postharvest Science, ARO, the Volcani Center, Bet Dagan, Israel.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

P. expansum is regarded as one of the most important postharvest rots of apple fruit and is also of great concern to fruit processing industries. Elucidating the pathogenicity mechanism of this pathogen is of utmost importance for the development of effective and safe management strategies. Although, many studies on modification of the host environment by the pathogen were done, its interactions with fruit during the early stages of infection and the virulence factors that mediate pathogenicity have not been fully defined. Effectors carrying LysM domain have been identified in numerous pathogenic fungi and their role in the first stages of infection has been established. In this study, we identified 18 LysM genes in the P. expansum genome. Amino acid sequence analysis indicated that P. expansum LysM proteins belong to a clade of fungal-specific LysM. Eleven of the discovered LysM genes were found to have secretory pathway signal peptide, among them, 4 (PeLysM1 PeLysM2, PeLysM3 and PeLysM4) were found to be highly expressed during the infection and development of decay of apple fruit. Effect of targeted deletion of the four putative PeLysM effectors on the growth and pathogenicity was studied. Possible interactions of PeLysM with host proteins was investigated using the yeast-two-hybrid system.

Indexed as

Genes, FungalAmino Acid SequenceGene Knockdown TechniquesMalusPenicilliumReverse Transcriptase Polymerase Chain ReactionSequence Homology, Amino AcidSpores, Fungal

Identifiers

PMID29084256
PMCPMC5662087

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.