Evidence map›Paper›PMID 29083504›Full record

ArticleHepatology (Baltimore, Md.)2018

The circulating microbiome signature and inferred functional metagenomics in alcoholic hepatitis.

Puneet Puri, Suthat Liangpunsakul, Jeffrey E Christensen, Vijay H Shah, Patrick S Kamath, Gregory J Gores, Susan Walker, Megan Comerford, Barry Katz, Andrew Borst and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 129 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Circulating urobilinogen augments inflammation and corticosteroid non-response in severe alcohol-induced hepatitis.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  6. Article
  7. Pathological Alterations in Human Blood Microbiome-An Updated Review.International journal of molecular sciences · 2025
    Review
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  9. Article
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24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Puneet PuriDivision of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Virginia Commonwealth University, Richmond, VA.
Suthat LiangpunsakulDivision of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN.
Jeffrey E ChristensenInstitut National de la Santé et de la Recherche Médicale (INSERM), Toulouse, France.
Vijay H ShahDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN.ORCID 0000-0001-7620-573X
Patrick S KamathDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN.
Gregory J GoresDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN.
Susan WalkerDivision of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Virginia Commonwealth University, Richmond, VA.
Megan ComerfordDivision of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN.
Barry KatzDepartment of Biostatistics, Indiana University School of Medicine, Indianapolis, IN.
Andrew BorstDepartment of Biostatistics, Indiana University School of Medicine, Indianapolis, IN.
Qigui YuDivision of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN.
Divya P KumarDivision of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Virginia Commonwealth University, Richmond, VA.
Faridoddin MirshahiDivision of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Virginia Commonwealth University, Richmond, VA.
Svetlana RadaevaNational Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Rockville, MD.
Naga P ChalasaniDivision of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN.
David W CrabbDivision of Gastroenterology and Hepatology, Department of Medicine, Indiana University School of Medicine, Indianapolis, IN.
Arun J SanyalDivision of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Virginia Commonwealth University, Richmond, VA.
TREAT Consortium
Virginia Commonwealth University · USIndiana University School of MedicineMayo Clinic in Arizona · USRichard L. Roudebush VA Medical Center · USInserm · FRNational Institute on Alcohol Abuse and Alcoholism · US

Funding

Translational Research and Evolving Alcoholic hepatitis Treatment (TREAT-IU)U01AA021840 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI NAGA P CHALASANI, Olawale Ojo · 2012 to 2026
$8.1M
TREAT-MayoU01AA021788 · NIAAA · MAYO CLINIC ROCHESTER · PI MALHI, HARMEET, SHAH, VIJAY H. · 2012 to 2022
$4.7M
Training Grant in Digestive Diseases and Liver DiseasesT32DK007150 · NIDDK · VIRGINIA COMMONWEALTH UNIVERSITY · PI SANYAL, ARUN J · 1986 to 2017
$4.2M
Molecular Mechanisms of Liver Fibrosis (Diversity Supplement)R37AA021171 · NIAAA · MAYO CLINIC ROCHESTER · PI VIJAY H. SHAH · 2019 to 2026
$3.0M
Integrated Therapies for Alcohol use in Alcohol-associated Liver Disease (ITAALD) – Mayo ClinicU01AA026974 · NIAAA · MAYO CLINIC ROCHESTER · PI VICTOR M. KARPYAK, VIJAY H. SHAH · 2018 to 2026
$2.9M
TREAT-VCUU01AA021891 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI SANYAL, ARUN J · 2012 to 2017
$2.5M
Molecular Mechanisms of Liver FibrosisR01AA021171 · NIAAA · MAYO CLINIC ROCHESTER · PI SHAH, VIJAY H. · 2012 to 2018
$2.5M
Alcohol's impact on immunological and virological profiles in HIV patientsUH3AA026218 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI YU, QIGUI A. · 2019 to 2021
$963k
Effect of alcohol on obesity related liver disease: Role of intestinal metabonomeK23AA021179 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI PURI, PUNEET · 2012 to 2016
$882k
Alcohol's impact on immunological and virological profiles in HIV patientsUH2AA026218 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI YU, QIGUI A. · 2017 to 2018
$318k
Translational Research and Evolving Alcoholic hepatitis Treatment (TREAT-ADMIN)U01AA021883 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI CRABB, DAVID W · 2012 to 2017
$229k
NIAAA NIH HHS K23 AA021179NIAAA NIH HHS R37 AA021171NIAAA NIH HHS U01 AA021788NIAAA NIH HHS U01 AA021840NIAAA NIH HHS U01 AA021883NIAAA NIH HHS U01 AA021891NIAAA NIH HHS U01 AA026974NIAAA NIH HHS UH2 AA026218NIAAA NIH HHS UH3 AA026218NIDDK NIH HHS T32 DK007150
6 · The paper itself

Abstract

Intestinal dysbiosis is implicated in alcoholic hepatitis (AH). However, changes in the circulating microbiome, its association with the presence and severity of AH, and its functional relevance in AH is unknown. Qualitative and quantitative assessment of changes in the circulating microbiome were performed by sequencing bacterial DNA in subjects with moderate AH (MAH) (n = 18) or severe AH (SAH) (n = 19). These data were compared with heavy drinking controls (HDCs) without obvious liver disease (n = 19) and non-alcohol-consuming controls (NACs, n = 20). The data were related to endotoxin levels and markers of monocyte activation. Linear discriminant analysis effect size (LEfSe) analysis, inferred metagenomics, and predictive functional analysis using PICRUSt were performed. There was a significant increase in 16S copies/ng DNA both in MAH (P < 0.01) and SAH (P < 0.001) subjects. Compared with NACs, the relative abundance of phylum Bacteroidetes was significantly decreased in HDCs, MAH, and SAH (P < 0.001). In contrast, all alcohol-consuming groups had enrichment with Fusobacteria; this was greatest for HDCs and decreased progressively in MAH and SAH. Subjects with SAH had significantly higher endotoxemia (P = 0.01). Compared with alcohol-consuming groups, predictive functional metagenomics indicated an enrichment of bacteria with genes related to methanogenesis and denitrification. Furthermore, both HDCs and SAH showed activation of a type III secretion system that has been linked to gram-negative bacterial virulence. Metagenomics in SAH versus NACs predicted increased isoprenoid synthesis via mevalonate and anthranilate degradation, known modulators of gram-positive bacterial growth and biofilm production, respectively.

conclusionHeavy alcohol consumption appears to be the primary driver of changes in the circulating microbiome associated with a shift in its inferred metabolic functions. (Hepatology 2018;67:1284-1302).

Indexed as

AdultAlcohol DrinkingDNA, BacterialEndotoxinsFemaleHepatitis, AlcoholicHumansLiverLiver Diseases, AlcoholicMaleMetagenomicsMicrobiotaMiddle AgedMonocytesDNA, BacterialEndotoxins

Identifiers

PMID29083504
PMCPMC5867221
OpenAlexW2766277817

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.