Evidence map›Paper›PMID 29083400›Full record

ArticleNature methods2017

Localization-based super-resolution imaging meets high-content screening.

Anne Beghin, Adel Kechkar, Corey Butler, Florian Levet, Marine Cabillic, Olivier Rossier, Gregory Giannone, Rémi Galland, Daniel Choquet, Jean-Baptiste Sibarita

Abstract read
PubMed Publisher
In one paragraph

Article in Nature methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
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  6. CaMKII Drives Synaptic Maturation by Coordinating Spine Remodeling and Receptor Segregation via Liquid-Liquid Phase Separation.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  7. Single-Photon Single-Particle Tracking.bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
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  11. Article
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  16. BNP-Track: A framework for multi-particle superresolved tracking.bioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anne BeghinUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.
Adel KechkarEcole Nationale Supérieure de Biotechnologie, Constantine, Algeria.
Corey ButlerUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.
Florian LevetUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.
Marine CabillicUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.
Olivier RossierUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.ORCID http://orcid.org/0000-0002-6932-931X
Gregory GiannoneUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.
Rémi GallandUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.
Daniel ChoquetUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.ORCID http://orcid.org/0000-0003-4726-9763
Jean-Baptiste SibaritaUniversité de Bordeaux, Institut interdisciplinaire de Neurosciences, Bordeaux, France.ORCID http://orcid.org/0000-0002-9920-7700

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-molecule localization microscopy techniques have proven to be essential tools for quantitatively monitoring biological processes at unprecedented spatial resolution. However, these techniques are very low throughput and are not yet compatible with fully automated, multiparametric cellular assays. This shortcoming is primarily due to the huge amount of data generated during imaging and the lack of software for automation and dedicated data mining. We describe an automated quantitative single-molecule-based super-resolution methodology that operates in standard multiwell plates and uses analysis based on high-content screening and data-mining software. The workflow is compatible with fixed- and live-cell imaging and allows extraction of quantitative data like fluorophore photophysics, protein clustering or dynamic behavior of biomolecules. We demonstrate that the method is compatible with high-content screening using 3D dSTORM and DNA-PAINT based super-resolution microscopy as well as single-particle tracking.

Indexed as

Databases, FactualAnimalsChlorocebus aethiopsCOS CellsData MiningFluorescent DyesHeLa CellsHumansImage Processing, Computer-AssistedMembrane ProteinsProtein TransportReceptors, NeurotransmitterSingle Molecule ImagingSoftwareWorkflowFluorescent DyesMembrane ProteinsReceptors, Neurotransmitter

Identifiers

PMID29083400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.