Evidence map›Paper›PMID 29082288›Full record

ArticleBio-protocol2014

Mapping RNA Sequences that Contact Viral Capsid Proteins in Virions.

C Cheng Kao, Ella Chuang, James Ford, Jie Huang, Ram Podicheti, Doug B Rusch

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bio-protocol, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

C Cheng KaoDepartment of Molecular & Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.
Ella ChuangDepartment of Molecular & Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.
James FordThe Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.
Jie HuangThe Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.
Ram PodichetiThe Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.
Doug B RuschThe Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405, USA.
Indiana University Bloomington · US

Funding

Molecular biology of viral capsidsR01AI090280 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI KAO, CHENG C · 2010 to 2013
$1.3M
NIAID NIH HHS R01 AI090280
6 · The paper itself

Abstract

We have adapted the methodology of CLIP-seq (Crosslinking-Immunoprecipitation and DNA Sequencing) to map the segments of encapsidated RNAs that contact the protein shells of virions. Results from the protocol report on the RNA sequences that contact the viral capsid.

Indexed as

CLIP-SeqProtein-RNA interactionRNA virusViral capsidVirion assembly

Identifiers

PMID29082288
PMCPMC5659631
OpenAlexW2743220136

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.