ArticleFrontiers in plant science2017
eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice.
Article in Frontiers in plant science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 28 citations in OpenAlex.
- Photosynthesis-related genetic and transcriptomic variations contribute to adaptive trait diversity in global Arabidopsis thaliana populations.BMC plant biology · 2026Article
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- Systems genomics of salinity stress response in rice.bioRxiv : the preprint server for biology · 2024Article
- Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice.Rice (New York, N.Y.) · 2023Article
- Multi-omics analysis reveals the genetic basis of rice fragrance mediated by betaine aldehyde dehydrogenase 2.Journal of advanced research · 2022Article
- Water stress resilient cereal crops: Lessons from wild relatives.Journal of integrative plant biology · 2022Review
- Genomic Basis of Transcriptome Dynamics in Rice under Field Conditions.Plant & cell physiology · 2021Article
- A combination of genome-wide and transcriptome-wide association studies reveals genetic elements leading to male sterility during high temperature stress in cotton.The New phytologist · 2021Article
- Genome-Wide Identification of Cis-acting Expression QTLs in Large Yellow Croaker.Marine biotechnology (New York, N.Y.) · 2021Article
- Recent Advances of Genetic Resources, Genes and Genetic Approaches for Flooding Tolerance in Rice.Current genomics · 2021Review
- Article
- Genetic architecture of leaf photosynthesis in rice revealed by different types of reciprocal mapping populations.Journal of experimental botany · 2019Article
- Triticale Improvement for Forage and Cover Crop Uses in the Southern Great Plains of the United States.Frontiers in plant science · 2018Review
- Integrated QTL and eQTL Mapping Provides Insights and Candidate Genes for Fatty Acid Composition, Flowering Time, and Growth Traits in a FFrontiers in plant science · 2018Article
Corrections and comments
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Authors and funding
8 authors at 6 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To avoid low oxygen, oxygen deficiency or oxygen deprivation, deepwater rice cultivated in flood planes can develop elongated internodes in response to submergence. Knowledge of the gene regulatory networks underlying rapid internode elongation is important for an understanding of the evolution and adaptation of major crops in response to flooding. To elucidate the genetic and molecular basis controlling their deepwater response we used microarrays and performed expression quantitative trait loci (eQTL) and phenotypic QTL (phQTL) analyses of internode samples of 85 recombinant inbred line (RIL) populations of non-deepwater (Taichung 65)- and deepwater rice (Bhadua). After evaluating the phenotypic response of the RILs exposed to submergence, confirming the genotypes of the populations, and generating 188 genetic markers, we identified 10,047 significant eQTLs comprised of 2,902
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