Evidence map›Paper›PMID 29080214›Full record

ArticleEuropean journal of immunology2018

Transcription factor YY1 can control AID-mediated mutagenesis in mice.

Kristina Zaprazna, Arindam Basu, Nikola Tom, Vibha Jha, Suchita Hodawadekar, Lenka Radova, Jitka Malcikova, Boris Tichy, Sarka Pospisilova, Michael L Atchison

Open access · hybridAbstract read
In one paragraph

Article in European journal of immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Kristina ZapraznaCentral European Institute of Technology, Masaryk University, Centre of Molecular Medicine, Brno, Czech Republic.
Arindam BasuDepartment of Biomedical Sciences, University of Pennsylvania, School of Veterinary Medicine, Philadelphia, PA, USA.
Nikola TomCentral European Institute of Technology, Masaryk University, Centre of Molecular Medicine, Brno, Czech Republic.
Vibha JhaDepartment of Biomedical Sciences, University of Pennsylvania, School of Veterinary Medicine, Philadelphia, PA, USA.
Suchita HodawadekarDepartment of Biomedical Sciences, University of Pennsylvania, School of Veterinary Medicine, Philadelphia, PA, USA.
Lenka RadovaCentral European Institute of Technology, Masaryk University, Centre of Molecular Medicine, Brno, Czech Republic.
Jitka MalcikovaCentral European Institute of Technology, Masaryk University, Centre of Molecular Medicine, Brno, Czech Republic.
Boris TichyCentral European Institute of Technology, Masaryk University, Centre of Molecular Medicine, Brno, Czech Republic.
Sarka PospisilovaCentral European Institute of Technology, Masaryk University, Centre of Molecular Medicine, Brno, Czech Republic.
Michael L AtchisonDepartment of Biomedical Sciences, University of Pennsylvania, School of Veterinary Medicine, Philadelphia, PA, USA.ORCID 0000-0002-6332-8463
Central European Institute of Technology · CZUniversity of Pennsylvania · US

Funding

Control of B cell Development by YY1R01AI079002 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2010 to 2020
$4.3M
The role of YY1 in constitutive and inducible DNA loop formationR01GM111384 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2014 to 2017
$1.2M
NIAID NIH HHS R01 AI079002NIGMS NIH HHS R01 GM111384
6 · The paper itself

Abstract

Activation-induced cytidine deminase (AID) is crucial for controlling the immunoglobulin (Ig) diversification processes of somatic hypermutation (SHM) and class switch recombination (CSR). AID initiates these processes by deamination of cytosine, ultimately resulting in mutations or double strand DNA breaks needed for SHM and CSR. Levels of AID control mutation rates, and off-target non-Ig gene mutations can contribute to lymphomagenesis. Therefore, factors that control AID levels in the nucleus can regulate SHM and CSR, and may contribute to disease. We previously showed that transcription factor YY1 can regulate the level of AID in the nucleus and Ig CSR. Therefore, we hypothesized that conditional knock-out of YY1 would lead to reduction in AID localization at the Ig locus, and reduced AID-mediated mutations. Using mice that overexpress AID (IgκAID yy1

Indexed as

AICDA (Activation-Induced Cytidine Deaminase)AnimalsB-LymphocytesCytidine DeaminaseDNA Breaks, Double-StrandedFemaleImmunoglobulin Class SwitchingLymphocyte ActivationMaleMiceMice, Inbred C57BLMice, KnockoutMice, TransgenicMutagenesisMutationProtein BindingAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseYY1 Transcription FactorAIDclass switch recombinationsomatic hypermutationYY1

Identifiers

PMID29080214
PMCPMC5884117
OpenAlexW2765282529

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.