Evidence map›Paper›PMID 29079850›Full record

ArticleNature communications2017

Structure of SgK223 pseudokinase reveals novel mechanisms of homotypic and heterotypic association.

Onisha Patel, Michael D W Griffin, Santosh Panjikar, Weiwen Dai, Xiuquan Ma, Howard Chan, Celine Zheng, Ashleigh Kropp, James M Murphy, Roger J Daly and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
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  18. Article
  19. PEAK3/C19orf35 pseudokinase, a new NFK3 kinase family member, inhibits CrkII through dimerization.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Prospects for pharmacological targeting of pseudokinases.Nature reviews. Drug discovery · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Onisha PatelThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia. patel.o@wehi.edu.au.
Michael D W GriffinDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, 3052, Australia.
Santosh PanjikarAustralian Synchrotron, Clayton, VIC, 3168, Australia.ORCID http://orcid.org/0000-0001-7429-3879
Weiwen DaiThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia.
Xiuquan MaDepartment of Biochemistry and Molecular Biology, Level 1, Building 77, Monash University, Clayton, VIC, 3800, Australia.
Howard ChanDepartment of Biochemistry and Molecular Biology, Level 1, Building 77, Monash University, Clayton, VIC, 3800, Australia.
Celine ZhengThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia.
Ashleigh KroppThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia.
James M MurphyThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia.
Roger J DalyDepartment of Biochemistry and Molecular Biology, Level 1, Building 77, Monash University, Clayton, VIC, 3800, Australia.
Isabelle S LucetThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, 3052, Australia. lucet.i@wehi.edu.au.ORCID http://orcid.org/0000-0002-8563-8753
The University of Melbourne · AUAustralian Regenerative Medicine Institute · AUAustralian Synchrotron · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian pseudokinase SgK223, and its structurally related homologue SgK269, are oncogenic scaffolds that nucleate the assembly of specific signalling complexes and regulate tyrosine kinase signalling. Both SgK223 and SgK269 form homo- and hetero-oligomers, a mechanism that underpins a diversity of signalling outputs. However, mechanistic insights into SgK223 and SgK269 homo- and heterotypic association are lacking. Here we present the crystal structure of SgK223 pseudokinase domain and its adjacent N- and C-terminal helices. The structure reveals how the N- and C-regulatory helices engage in a novel fold to mediate the assembly of a high-affinity dimer. In addition, we identified regulatory interfaces on the pseudokinase domain required for the self-assembly of large open-ended oligomers. This study highlights the diversity in how the kinase fold mediates non-catalytic functions and provides mechanistic insights into how the assembly of these two oncogenic scaffolds is achieved in order to regulate signalling output.

Indexed as

Adenosine TriphosphateArea Under CurveBinding SitesCarrier ProteinsCatalysisCell Line, TumorCluster AnalysisCrystallography, X-RayHEK293 CellsHumansHydrophobic and Hydrophilic InteractionsIntracellular Signaling Peptides and ProteinsProtein BindingProtein DomainsProtein MultimerizationProtein-Tyrosine KinasesAdenosine TriphosphateCarrier ProteinsIntracellular Signaling Peptides and ProteinsPEAK1 protein, humanPRAG1 protein, humanProtein-Tyrosine KinasesRecombinant Proteins

Identifiers

PMID29079850
PMCPMC5660093
OpenAlexW2766118467

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.