Evidence map›Paper›PMID 29079797›Full record

ArticleNature communications2017

Multi-wavelength anomalous diffraction de novo phasing using a two-colour X-ray free-electron laser with wide tunability.

Alexander Gorel, Koji Motomura, Hironobu Fukuzawa, R Bruce Doak, Marie Luise Grünbein, Mario Hilpert, Ichiro Inoue, Marco Kloos, Gabriela Kovácsová, Eriko Nango and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. High-throughput in situ experimental phasing.Acta crystallographica. Section D, Structural biology · 2020
    Article
  9. Article
  10. SPIND-TC: an indexing method for two-color X-ray diffraction data.Acta crystallographica. Section A, Foundations and advances · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. SAD phasing of XFEL data depends critically on the error model.Acta crystallographica. Section D, Structural biology · 2019
    Article
  15. Review
  16. Review
  17. Article
  18. Journal of applied crystallography · 2019
    Article
  19. Crystallography on a chip - without the chip: sheet-on-sheet sandwich.Acta crystallographica. Section D, Structural biology · 2018
    Article
  20. IUCrJ · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Alexander GorelMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Koji MotomuraInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577, Japan.
Hironobu FukuzawaInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577, Japan.
R Bruce DoakMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Marie Luise GrünbeinMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Mario HilpertMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Ichiro InoueRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo, 679-5148, Japan.
Marco KloosMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Gabriela KovácsováMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Eriko NangoRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo, 679-5148, Japan.
Karol NassMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Christopher M RoomeMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Robert L ShoemanMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Rie TanakaRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo, 679-5148, Japan.
Kensuke TonoJapan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
Yasumasa JotiJapan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
Makina YabashiRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo, 679-5148, Japan.ORCID http://orcid.org/0000-0002-2472-1684
So IwataRIKEN SPring-8 Center, Kouto 1-1-1, Sayo, Hyogo, 679-5148, Japan.
Lutz FoucarMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Kiyoshi UedaInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577, Japan.
Thomas R M BarendsMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany.
Ilme SchlichtingMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, Heidelberg, 69120, Germany. Ilme.Schlichting@mpimf-heidelberg.mpg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Serial femtosecond crystallography at X-ray free-electron lasers (XFELs) offers unprecedented possibilities for macromolecular structure determination of systems prone to radiation damage. However, de novo structure determination, i.e., without prior structural knowledge, is complicated by the inherent inaccuracy of serial femtosecond crystallography data. By its very nature, serial femtosecond crystallography data collection entails shot-to-shot fluctuations in X-ray wavelength and intensity as well as variations in crystal size and quality that must be averaged out. Hence, to obtain accurate diffraction intensities for de novo phasing, large numbers of diffraction patterns are required, and, concomitantly large volumes of sample and long X-ray free-electron laser beamtimes. Here we show that serial femtosecond crystallography data collected using simultaneous two-colour X-ray free-electron laser pulses can be used for multiple wavelength anomalous dispersion phasing. The phase angle determination is significantly more accurate than for single-colour phasing. We anticipate that two-colour multiple wavelength anomalous dispersion phasing will enhance structure determination of difficult-to-phase proteins at X-ray free-electron lasers.

Identifiers

PMID29079797
PMCPMC5660077

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.