Evidence map›Paper›PMID 29079776›Full record

ArticleNature communications2017

Sulfur availability regulates plant growth via glucose-TOR signaling.

Yihan Dong, Marleen Silbermann, Anna Speiser, Ilaria Forieri, Eric Linster, Gernot Poschet, Arman Allboje Samami, Mutsumi Wanatabe, Carsten Sticht, Aurelio A Teleman and 4 more

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
42.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 168 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Autophagy in plants.Autophagy reports · 2024
    Review
  6. TORC pathway intersects with a calcium sensor kinase network to regulate potassium sensing inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Interaction between Sulfate and Selenate in Tetraploid Wheat (International journal of molecular sciences · 2023
    Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review: Emerging roles of the signaling network of the protein kinase GCN2 in the plant stress response.Plant science : an international journal of experimental plant biology · 2022
    Review
  19. Review
  20. Linking Autophagy to Potential Agronomic Trait Improvement in Crops.International journal of molecular sciences · 2022
    Review

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Yihan DongCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany.
Marleen SilbermannCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany.
Anna SpeiserCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany.
Ilaria ForieriCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany.
Eric LinsterCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany.
Gernot PoschetCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany.
Arman Allboje SamamiCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany.
Mutsumi WanatabeGraduate School of Pharmaceutical Sciences, Chiba University, Chiba, 260-8675, Japan.
Carsten StichtCenter for Medical Research, University of Mannheim, 68167, Mannheim, Germany.
Aurelio A TelemanGerman Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.
Jean-Marc DeragonLaboratory of Genomes and Plant Development, Centre National de la Recherche Scientifique, University of Perpignan, 66100, Perpignan, France.
Kazuki SaitoGraduate School of Pharmaceutical Sciences, Chiba University, Chiba, 260-8675, Japan.
Rüdiger HellCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany. ruediger.hell@cos.uni-heidelberg.de.
Markus WirtzCentre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 360, 69120, Heidelberg, Germany. markus.wirtz@cos.uni-heidelberg.de.ORCID http://orcid.org/0000-0001-7790-4022
Heidelberg University · DEChiba University · JPCentre National de la Recherche Scientifique · FRGerman Cancer Research Center · DEUniversity of Mannheim · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Growth of eukaryotic cells is regulated by the target of rapamycin (TOR). The strongest activator of TOR in metazoa is amino acid availability. The established transducers of amino acid sensing to TOR in metazoa are absent in plants. Hence, a fundamental question is how amino acid sensing is achieved in photo-autotrophic organisms. Here we demonstrate that the plant Arabidopsis does not sense the sulfur-containing amino acid cysteine itself, but its biosynthetic precursors. We identify the kinase GCN2 as a sensor of the carbon/nitrogen precursor availability, whereas limitation of the sulfur precursor is transduced to TOR by downregulation of glucose metabolism. The downregulated TOR activity caused decreased translation, lowered meristematic activity, and elevated autophagy. Our results uncover a plant-specific adaptation of TOR function. In concert with GCN2, TOR allows photo-autotrophic eukaryotes to coordinate the fluxes of carbon, nitrogen, and sulfur for efficient cysteine biosynthesis under varying external nutrient supply.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsAutophagyGenotypeGlucoseMeristemPhenotypePhosphatidylinositol 3-KinasesPlant DevelopmentPlant RootsProtein BiosynthesisProtein KinasesRNA, RibosomalSignal TransductionSulfidesArabidopsis ProteinsGCN2 protein, ArabidopsisGlucosePhosphatidylinositol 3-KinasesProtein KinasesRNA, RibosomalSulfidesSulfurTOR protein, Arabidopsis

Identifiers

PMID29079776
PMCPMC5660089
OpenAlexW2766298100

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.