Evidence map›Paper›PMID 29079757›Full record

ArticleScientific reports2017

Oligomerization and ATP stimulate condensin-mediated DNA compaction.

Ross A Keenholtz, Thillaivillalan Dhanaraman, Roger Palou, Jia Yu, Damien D'Amours, John F Marko

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  10. Genome folding through loop extrusion by SMC complexes.Nature reviews. Molecular cell biology · 2021
    Review
  11. Article
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  13. Review
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  15. Article
  16. Review
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  18. Article
  19. Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. RNA polymerases as moving barriers to condensin loop extrusion.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Ross A KeenholtzDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA.
Thillaivillalan DhanaramanInstitute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec, H3C 3J7, Canada.
Roger PalouInstitute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec, H3C 3J7, Canada.
Jia YuDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA.
Damien D'AmoursInstitute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec, H3C 3J7, Canada.
John F MarkoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA. john-marko@northwestern.edu.
Northwestern University · USInstitute for Research in Immunology and Cancer · CAUniversité de Montréal · CAUniversity of Ottawa · CA

Funding

Center for 3D Structure and Physics of the GenomeU54DK107980 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2015 to 2019
$14.9M
Spatio-Temporal Organization of Chromatin and Information Transfer in CancerU54CA193419 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MARKO, JOHN F · 2015 to 2020
$10.4M
Activities of nucleoprotein complexes visualized in single-molecule experimentsR01GM105847 · NIGMS · NORTHWESTERN UNIVERSITY · PI MARKO, JOHN F · 2013 to 2025
$2.5M
CIHR MOP-136788CIHR MOP-82912CIHR PJT-148969NCI NIH HHS U54 CA193419NIDDK NIH HHS U54 DK107980NIGMS NIH HHS R01 GM105847
6 · The paper itself

Abstract

Large-scale chromatin remodeling during mitosis is catalyzed by a heteropentameric enzyme known as condensin. The DNA-organizing mechanism of condensin depends on the energy of ATP hydrolysis but how this activity specifically promotes proper compaction and segregation of chromosomes during mitosis remains poorly understood. Purification of budding yeast condensin reveals that it occurs not only in the classical heteropentameric "monomer" form, but that it also adopts much larger configurations consistent with oligomerization. We use a single-DNA magnetic tweezers assay to study compaction of DNA by yeast condensin, with the result that only the multimer shows ATP-enhanced DNA-compaction. The compaction reaction involves step-like events of 200 nm (600 bp) size and is strongly suppressed by forces above 1 pN, consistent with a loop-capture mechanism for initial binding and compaction. The compaction reactions are largely insensitive to DNA torsional stress. Our results suggest a physiological role for oligomerized condensin in driving gradual chromatin compaction by step-like and slow "creeping" dynamics consistent with a loop-extrusion mechanism.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateBiomechanical PhenomenaChromatin Assembly and DisassemblyDNADNA-Binding ProteinsFungal ProteinsMultiprotein ComplexesNucleic Acid ConformationProtein BindingSaccharomycetalesStress, MechanicalAdenosine TriphosphatasesAdenosine Triphosphatecondensin complexesDNADNA-Binding ProteinsFungal ProteinsMultiprotein Complexes

Identifiers

PMID29079757
PMCPMC5660149
OpenAlexW2765506009

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.