Evidence map›Paper›PMID 29078993›Full record

ArticleJournal of structural biology2018

Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells.

Stephen D Carter, Shrawan K Mageswaran, Zachary J Farino, João I Mamede, Catherine M Oikonomou, Thomas J Hope, Zachary Freyberg, Grant J Jensen

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Cryogenic electron tomography by the numbers: Charting underexplored lineages in structural cell biology.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  10. Quantitative, in situ visualization of intracellular insulin vesicles in pancreatic beta cells.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  20. Cryo-SOFI enabling low-dose super-resolution correlative light and electron cryo-microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Stephen D CarterDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Shrawan K MageswaranDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Zachary J FarinoDepartment of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213, USA.
João I MamedeDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA.
Catherine M OikonomouDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Thomas J HopeDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA.
Zachary FreybergDepartment of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213, USA; Department of Cell Biology, University of Pittsburgh, PA 15213, USA. Electronic address: freyberg@pitt.edu.
Grant J JensenDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute (HHMI), California Institute of Technology, Pasadena, CA 91125, USA. Electronic address: Jensen@caltech.edu.
California Institute of Technology · USNorthwestern University · USUniversity of Pittsburgh · USHoward Hughes Medical Institute · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Revealing Novel Mechanisms of Amphetamine Action in a Drosophila ModelK08DA031241 · NIDA · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI FREYBERG, ZACHARY · 2011 to 2015
$931k
NIDA NIH HHS K08 DA031241NIGMS NIH HHS P50 GM082545
6 · The paper itself

Abstract

In cryogenic correlated light and electron microscopy (cryo-CLEM), frozen targets of interest are identified and located on EM grids by fluorescence microscopy and then imaged at higher resolution by cryo-EM. Whilst working with these methods, we discovered that a variety of mammalian cells exhibit strong punctate autofluorescence when imaged under cryogenic conditions (80 K). Autofluorescence originated from multilamellar bodies (MLBs) and secretory granules. Here we describe a method to distinguish fluorescent protein tags from these autofluorescent sources based on the narrower emission spectrum of the former. The method is first tested on mitochondria and then applied to examine the ultrastructural variability of secretory granules within insulin-secreting pancreatic beta-cell-derived INS-1E cells.

Indexed as

AnimalsCell Line, TumorCryoelectron MicroscopyFibroblastsFluorescein-5-isothiocyanateFluorescenceHeLa CellsHumansInsulin-Secreting CellsLuminescent ProteinsMicroscopy, FluorescenceMitochondriaRatsSecretory VesiclesFluorescein-5-isothiocyanateLuminescent ProteinsAutofluorescenceCryo-CLEMElectron cryo-tomographyFluorescent proteinsMammalian cells

Identifiers

PMID29078993
PMCPMC5771259
OpenAlexW2952799493

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.