Evidence map›Paper›PMID 29078375›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Cryo-EM structure of Mcm2-7 double hexamer on DNA suggests a lagging-strand DNA extrusion model.

Yasunori Noguchi, Zuanning Yuan, Lin Bai, Sarah Schneider, Gongpu Zhao, Bruce Stillman, Christian Speck, Huilin Li

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Article
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  6. An Orc6 tether mediates ORC binding-site switching during replication origin licensing.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Compact Origins and Where to Find Them: ORC's Guide to Genome-Wide Licensing.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yasunori NoguchiDNA Replication Group, Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.
Zuanning YuanCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, MI 49503.
Lin BaiCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, MI 49503.
Sarah SchneiderDNA Replication Group, Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom.
Gongpu ZhaoCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, MI 49503.
Bruce StillmanCold Spring Harbor Laboratory, Cold Spring Harbor, NY11724 stillman@cshl.edu chris.speck@imperial.ac.uk Huilin.Li@VAI.org.ORCID 0000-0002-9453-4091
Christian SpeckDNA Replication Group, Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London W12 0NN, United Kingdom; stillman@cshl.edu chris.speck@imperial.ac.uk Huilin.Li@VAI.org.ORCID 0000-0001-6646-1692
Huilin LiCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, MI 49503; stillman@cshl.edu chris.speck@imperial.ac.uk Huilin.Li@VAI.org.

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
REGULATION OF DNA REPLICATIONR01GM045436 · NIGMS · COLD SPRING HARBOR LABORATORY · PI STILLMAN, BRUCE W. · 1991 to 2025
$15.8M
Structural mechanism of DNA replicationR35GM131754 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI Huilin Li · 2019 to 2026
$6.0M
Structural Basis of Eukaryotic Replication Initiation by Cryo-EMR01GM111742 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI LI, HUILIN · 2015 to 2018
$1.4M
Biotechnology and Biological Sciences Research Council BB/N000323/1Medical Research Council MC_U120085811NCI NIH HHS P30 CA045508NIGMS NIH HHS R01 GM045436NIGMS NIH HHS R01 GM111742NIGMS NIH HHS R35 GM131754Wellcome TrustWellcome Trust 107903/Z/15/Z
6 · The paper itself

Abstract

During replication initiation, the core component of the helicase-the Mcm2-7 hexamer-is loaded on origin DNA as a double hexamer (DH). The two ring-shaped hexamers are staggered, leading to a kinked axial channel. How the origin DNA interacts with the axial channel is not understood, but the interaction could provide key insights into Mcm2-7 function and regulation. Here, we report the cryo-EM structure of the Mcm2-7 DH on dsDNA and show that the DNA is zigzagged inside the central channel. Several of the Mcm subunit DNA-binding loops, such as the oligosaccharide-oligonucleotide loops, helix 2 insertion loops, and presensor 1 (PS1) loops, are well defined, and many of them interact extensively with the DNA. The PS1 loops of Mcm 3, 4, 6, and 7, but not 2 and 5, engage the lagging strand with an approximate step size of one base per subunit. Staggered coupling of the two opposing hexamers positions the DNA right in front of the two Mcm2-Mcm5 gates, with each strand being pressed against one gate. The architecture suggests that lagging-strand extrusion initiates in the middle of the DH that is composed of the zinc finger domains of both hexamers. To convert the Mcm2-7 DH structure into the Mcm2-7 hexamer structure found in the active helicase, the N-tier ring of the Mcm2-7 hexamer in the DH-dsDNA needs to tilt and shift laterally. We suggest that these N-tier ring movements cause the DNA strand separation and lagging-strand extrusion.

Indexed as

DNADNA-Binding ProteinsDNA HelicasesDNA ReplicationMinichromosome Maintenance ProteinsOligosaccharidesProtein DomainsZinc FingersDNADNA-Binding ProteinsDNA HelicasesMinichromosome Maintenance ProteinsOligosaccharidescryo-electron microscopyDNA replicationDNA unwindinghelicasemini chromosome maintenance

Identifiers

PMID29078375
PMCPMC5692578

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.