Evidence map›Paper›PMID 29078363›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.

Clément Charenton, Claudine Gaudon-Plesse, Zaineb Fourati, Valerio Taverniti, Régis Back, Olga Kolesnikova, Bertrand Séraphin, Marc Graille

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. The mRNA decapping machinery targetsLife science alliance · 2023
    Article
  11. Article
  12. Article
  13. Quantitative reconstitution of yeast RNA processing bodies.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Review
  16. Dcp2 C-terminaleLife · 2022
    Article
  17. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review
  18. Making ends meet: New functions of mRNA secondary structure.Wiley interdisciplinary reviews. RNA · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Clément CharentonLaboratoire de Biochimie, Ecole Polytechnique, CNRS, Université Paris-Saclay, 91128 Palaiseau cedex, France.
Claudine Gaudon-PlesseInstitut de Génétique et de Biologie Moléculaire et Cellulaire, 67400 Illkirch, France.
Zaineb FouratiLaboratoire de Biochimie, Ecole Polytechnique, CNRS, Université Paris-Saclay, 91128 Palaiseau cedex, France.
Valerio TavernitiInstitut de Génétique et de Biologie Moléculaire et Cellulaire, 67400 Illkirch, France.
Régis BackLaboratoire de Biochimie, Ecole Polytechnique, CNRS, Université Paris-Saclay, 91128 Palaiseau cedex, France.
Olga KolesnikovaInstitut de Génétique et de Biologie Moléculaire et Cellulaire, 67400 Illkirch, France.
Bertrand SéraphinInstitut de Génétique et de Biologie Moléculaire et Cellulaire, 67400 Illkirch, France; seraphin@igbmc.fr marc.graille@polytechnique.edu.
Marc GrailleLaboratoire de Biochimie, Ecole Polytechnique, CNRS, Université Paris-Saclay, 91128 Palaiseau cedex, France; seraphin@igbmc.fr marc.graille@polytechnique.edu.
Centre National de la Recherche Scientifique · FRÉcole Polytechnique · FRUniversité Paris-Saclay · FRInserm · FRUniversité de Strasbourg · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Pat1 protein is a central player of eukaryotic mRNA decay that has also been implicated in translational control. It is commonly considered a central platform responsible for the recruitment of several RNA decay factors. We demonstrate here that a yeast-specific C-terminal region from Pat1 interacts with several short motifs, named helical leucine-rich motifs (HLMs), spread in the long C-terminal region of yeast Dcp2 decapping enzyme. Structures of Pat1-HLM complexes reveal the basis for HLM recognition by Pat1. We also identify a HLM present in yeast Xrn1, the main 5'-3' exonuclease involved in mRNA decay. We show further that the ability of yeast Pat1 to bind HLMs is required for efficient growth and normal mRNA decay. Overall, our analyses indicate that yeast Pat1 uses a single binding surface to successively recruit several mRNA decay factors and show that interaction between those factors is highly polymorphic between species.

Indexed as

EndoribonucleasesExoribonucleasesFungal ProteinsProtein BindingProtein DomainsRNA-Binding ProteinsRNA, MessengerRNA StabilityYeastsEndoribonucleasesExoribonucleasesFungal ProteinsmRNA decapping enzymesRNA-Binding ProteinsRNA, Messengereukaryotic mRNA decaymRNA decappingprotein–protein interactionyeast

Identifiers

PMID29078363
PMCPMC5692570
OpenAlexW2766233020

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.