Evidence map›Paper›PMID 29078340›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Meta-mass shift chemical profiling of metabolomes from coral reefs.

Aaron C Hartmann, Daniel Petras, Robert A Quinn, Ivan Protsyuk, Frederick I Archer, Emma Ransome, Gareth J Williams, Barbara A Bailey, Mark J A Vermeij, Theodore Alexandrov and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  11. Qualitative metabolomics-based characterization of a phenolic UDP-xylosyltransferase with a broad substrate spectrum fromProceedings of the National Academy of Sciences of the United States of America · 2023
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  20. Intraspecific variation in polar and nonpolar metabolite profiles of a threatened Caribbean coral.Metabolomics : Official journal of the Metabolomic Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Aaron C HartmannDepartment of Biology, San Diego State University, San Diego, CA 92182; aaron.hartmann@gmail.com.
Daniel PetrasCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093.
Robert A QuinnCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093.
Ivan ProtsyukStructural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Frederick I ArcherSouthwest Fisheries Science Center, National Oceanic and Atmospheric Administration, La Jolla, CA 92037.
Emma RansomeInvertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560.
Gareth J WilliamsSchool of Ocean Sciences, Bangor University, Anglesey LL59 5AB, United Kingdom.
Barbara A BaileyDepartment of Mathematics and Statistics, San Diego State University, San Diego, CA 92182.
Mark J A VermeijCARMABI Foundation, Willemstad, Curaçao.
Theodore AlexandrovCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093.
Pieter C DorresteinCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093.
Forest L RohwerDepartment of Biology, San Diego State University, San Diego, CA 92182.

Funding

TrainingP41GM103484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PEVZNER, PAVEL A · 2012 to 2018
$8.7M
Reuse of Public Metabolomics DataR03CA211211 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DORRESTEIN, PIETER C · 2016 to 2016
$155k
NCI NIH HHS R03 CA211211NIGMS NIH HHS P41 GM103484
6 · The paper itself

Abstract

Untargeted metabolomics of environmental samples routinely detects thousands of small molecules, the vast majority of which cannot be identified. Meta-mass shift chemical (MeMSChem) profiling was developed to identify mass differences between related molecules using molecular networks. This approach illuminates metabolome-wide relationships between molecules and the putative chemical groups that differentiate them (e.g., H

Indexed as

AnimalsAnthozoaCoral ReefsMetabolomeMetabolomicsTranscriptomecoral reefsmolecular networkingsmall moleculesuntargeted metabolomics

Identifiers

PMID29078340
PMCPMC5676912

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.