Evidence map›Paper›PMID 29078296›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.

Dario Copetti, Alberto Búrquez, Enriquena Bustamante, Joseph L M Charboneau, Kevin L Childs, Luis E Eguiarte, Seunghee Lee, Tiffany L Liu, Michelle M McMahon, Noah K Whiteman and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 128 citations in OpenAlex.

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  8. Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Phylogenomics and classification of Cactaceae based on hundreds of nuclear genes.Plant systematics and evolution = Entwicklungsgeschichte und Systematik der Pflanzen · 2025
    Article
  12. Article
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  14. Review
  15. Article
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  17. Genomic insights into the clonal reproductiveFrontiers in plant science · 2024
    Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Dario CopettiArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721.ORCID 0000-0002-2680-2568
Alberto BúrquezInstituto de Ecología, Unidad Hermosillo, Universidad Nacional Autónoma de México, Hermosillo, Sonora, Mexico.
Enriquena BustamanteInstituto de Ecología, Unidad Hermosillo, Universidad Nacional Autónoma de México, Hermosillo, Sonora, Mexico.
Joseph L M CharboneauDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721.
Kevin L ChildsDepartment of Plant Biology, Michigan State University, East Lansing, MI 48824.
Luis E EguiarteDepartamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, Mexico.
Seunghee LeeArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721.
Tiffany L LiuDepartment of Plant Biology, Michigan State University, East Lansing, MI 48824.
Michelle M McMahonSchool of Plant Sciences, University of Arizona, Tucson, AZ 85721.
Noah K WhitemanDepartment of Integrative Biology, University of California, Berkeley, CA 94720.
Rod A WingArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721.
Martin F WojciechowskiSchool of Life Sciences, Arizona State University, Tempe, AZ 85287.
Michael J SandersonDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721; sanderm@email.arizona.edu.
University of Arizona · USMichigan State University · USUniversidad de Hermosillo · MXArizona State University · USInstituto de Ecología · MXUniversity of California, Berkeley · US

Funding

Co-evolutionary Genetics of Host-Parasite InteractionsR35GM119816 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOAH K WHITEMAN · 2016 to 2026
$4.7M
NIGMS NIH HHS R35 GM119816
6 · The paper itself

Abstract

Few clades of plants have proven as difficult to classify as cacti. One explanation may be an unusually high level of convergent and parallel evolution (homoplasy). To evaluate support for this phylogenetic hypothesis at the molecular level, we sequenced the genomes of four cacti in the especially problematic tribe Pachycereeae, which contains most of the large columnar cacti of Mexico and adjacent areas, including the iconic saguaro cactus (

Indexed as

Base SequenceCactaceaeEvolution, MolecularGenome, PlantGenomicsMexicoModels, GeneticNorth AmericaPhylogenyhomoplasylineage sortingphylogenomicsSaguaro

Identifiers

PMID29078296
PMCPMC5692538
OpenAlexW2765815222

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.