Evidence map›Paper›PMID 29077717›Full record

ArticlePLoS neglected tropical diseases2017

A polymorphism in the haptoglobin, haptoglobin related protein locus is associated with risk of human sleeping sickness within Cameroonian populations.

Elvis Ofon, Harry Noyes, Julius Mulindwa, Hamidou Ilboudo, Martin Simuunza, Vincent Ebo'o, Flobert Njiokou, Mathurin Koffi, Bruno Bucheton, Pythagore Fogue and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 10 institutions in 8 countries.

Elvis OfonMolecular Parasitology & Entomology Unit, Department of Biochemistry, Faculty of Science, University of Dschang, Dschang, Cameroon.
Harry NoyesCentre for Genomic Research, University of Liverpool, Liverpool, United Kingdom.
Julius MulindwaDepartment of Biochemistry, CONAS, Makerere University, Kampala, Uganda.
Hamidou IlboudoUnité de recherche sur les bases biologiques de la lutte intégrée, Centre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso.
Martin SimuunzaDepartment of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka, Zambia.
Vincent Ebo'oNational Sleeping sickness control Program of Cameroon, Ministry of Public Health, Yaoundé, Cameroon.
Flobert NjiokouLaboratory of Molecular Biology, Department of Animal Biology, Faculty of Science, University of Yaoundé 1, Yaounde, Cameroon.
Mathurin KoffiLaboratoire des interactions Hôte-Microorganismes-Environnement et Evolution, Unité de Formation et de Recherche Environnement, Université Jean Lorougnon Guédé, Daloa, Côte d'Ivoire.
Bruno BuchetonInstitut de Recherche pour le Développement (IRD), UMR INTERTRYP IRD-CIRAD, Campus international de Baillarguet, Montpellier, France.
Pythagore FogueMolecular Parasitology & Entomology Unit, Department of Biochemistry, Faculty of Science, University of Dschang, Dschang, Cameroon.
Christiane Hertz-FowlerCentre for Genomic Research, University of Liverpool, Liverpool, United Kingdom.
Annette MacLeodInstitute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Garscube Estate, Glasgow, United Kingdom.
Gustave SimoMolecular Parasitology & Entomology Unit, Department of Biochemistry, Faculty of Science, University of Dschang, Dschang, Cameroon.ORCID http://orcid.org/0000-0002-0449-818X
TrypanoGEN Research Group, as members of The H3Africa Consortium
Université de Dschang · CMUniversity of Liverpool · GBCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRCentre international de recherche-développement sur l'elevage en zone subhumide · BFMakerere University · UGMinistry of Public Health · CMUniversité de Yaoundé I · CMUniversité Jean Lorougnon Guédé · CIUniversity of Glasgow · GBUniversity of Zambia · ZM

Funding

Medical Research Council G0900753Medical Research Council MR/K002279/1Wellcome Trust
6 · The paper itself

Abstract

backgroundHuman African Trypanosomiasis (HAT) is a neglected disease targeted for elimination as a public health problem by 2020. Elimination requires a better understanding of the epidemiology and clinical evolution of HAT. In addition to the classical clinical evolution of HAT, asymptomatic carriers and spontaneous cure have been reported in West Africa. A genetic component to human susceptibility to HAT has been suggested to explain these newly observed responses to infection. In order to test for genetic associations with infection response, genetic polymorphism in 17 genes were tested (APOL1, IL1B, IL4, IL4R, IL6, IL8, IL12B, IL12RB1, IL10, TNFA, INFG, MIF, HLA-G, HLA-A, HP, HPR and CFH). METHODOLOGY: A case-control study was performed on 180 blood samples collected from 56 cases and 124 controls from Cameroon. DNA was extracted from blood samples. After quality control, 25 samples (24 controls and 1 case) were eliminated. The genotyping undertaken on 155 individuals including 55 cases and 100 controls were investigated at 96 loci (88 SNPs and 8 indels) located on 17 genes. Associations between these loci and HAT were estimated via a case-control association test.

resultsAnalyses of 64 SNPs and 4 indels out of 96 identified in the selected genes reveal that the minor allele (T) of rs8062041 in haptoglobin (HP) appeared to be protective against HAT (p = 0.0002395, OR 0.359 (CI95 [0.204-0.6319])); indicating higher frequency in cases compared to controls. This minor allele with adjusted p value of 0.0163 is associated with a lower risk (protective effect) of developing sleeping sickness.

conclusionThe haptoglobin related protein HPR and HP are tightly linked and both are duplicated in some people and may lead to higher activity. This increased production could be responsible of the protection associated with rs8062041 even though this SNP is within HP.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdolescentAdultAgedAged, 80 and overAllelesAntigens, NeoplasmAsymptomatic DiseasesCameroonCase-Control StudiesChildFemaleGene FrequencyGenetic Association StudiesGenotypeAntigens, NeoplasmHaptoglobinsHP protein, humanHPR protein, human

Identifiers

PMID29077717
PMCPMC5697879
OpenAlexW2765598384

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.