ArticlePlant molecular biology2017
RNA-seq analysis provides insight into reprogramming of culm development in Zizania latifolia induced by Ustilago esculenta.
Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed, 52 citations in OpenAlex.
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- The Novel Effector Ue943 Is Essential for Host Plant Colonization byJournal of fungi (Basel, Switzerland) · 2023Article
- The transcriptional landscape of plant infection by the rice blast fungus Magnaporthe oryzae reveals distinct families of temporally co-regulated and structurally conserved effectors.The Plant cell · 2023Article
- Domestication, breeding, omics research, and important genes ofFrontiers in plant science · 2023Review
- An Endoglucanase Secreted byJournal of fungi (Basel, Switzerland) · 2022Article
- Germicide Fenaminosulf Promots Gall Formation of Zizania latifolia without directly affecting the growth of endophytic fungus Ustilago esculenta.BMC plant biology · 2022Article
- Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis.Communications biology · 2022Article
- Mixed Transcriptome Analysis Revealed the Possible Interaction Mechanisms betweenInternational journal of molecular sciences · 2021Article
- Role of Long Noncoding RNAs ZlMSTRG.11348 and UeMSTRG.02678 in Temperature-Dependent Culm Swelling inInternational journal of molecular sciences · 2021Article
- Genome-Wide Characterization and Expression of Two-Component System Genes in Cytokinin-Regulated Gall Formation inPlants (Basel, Switzerland) · 2020Article
- Plant tumors: a hundred years of study.Planta · 2020Review
- Microbial Diversity in the Edible Gall on White Bamboo Formed by the Interaction between Ustilago esculenta and Zizania latifolia.Current microbiology · 2019Article
- Inferring the Origin of CultivatedFrontiers in plant science · 2019Article
- RNA Sequencing Provides Insights into the Regulation of Solanesol Biosynthesis in Nicotiana tabacum Induced by Moderately High Temperature.Biomolecules · 2018Article
- Morphological Characteristics, Nutrients, and Bioactive Compounds ofMolecules (Basel, Switzerland) · 2018Review
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
Abstract
key messageWe report a transcriptome assembly and expression profiles from RNA-Seq data and identify genes responsible for culm gall formation in Zizania latifolia induced by Ustilago esculenta. The smut fungus Ustilago esculenta can induce culm gall in Zizania latifolia, which is used as a vegetable in Asian countries. However, the underlying molecular mechanism of culm gall formation is still unclear. To characterize the processes underlying this host-fungus association, we performed transcriptomic and expression profiling analyses of culms from Z. latifolia infected by the fungus U. esculenta. Transcriptomic analysis detected U. esculenta induced differential expression of 19,033 and 17,669 genes in Jiaobai (JB) and Huijiao (HJ) type of gall, respectively. Additionally, to detect the potential gall inducing genes, expression profiles of infected culms collected at -7, 1 and 10 DAS of culm gall development were analyzed. Compared to control, we detected 8089 genes (4389 up-regulated, 3700 down-regulated) and 5251 genes (3121 up-regulated, 2130 down-regulated) were differentially expressed in JB and HJ, respectively. And we identified 376 host and 187 fungal candidate genes that showed stage-specific expression pattern, which are possibly responsible for gall formation at the initial and later phases, respectively. Our results indicated that cytokinins play more prominent roles in regulating gall formation than do auxins. Together, our work provides general implications for the understanding of gene regulatory networks for culm gall development in Z. latifolia, and potential targets for genetic manipulation to improve the future yield of this crop.
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