Evidence map›Paper›PMID 29075666›Full record

ArticleScience advances2017

A drug pocket at the lipid bilayer-potassium channel interface.

Nina E Ottosson, Malin Silverå Ejneby, Xiongyu Wu, Samira Yazdi, Peter Konradsson, Erik Lindahl, Fredrik Elinder

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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  8. Coupling stabilizers open KProceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nina E OttossonDepartment of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.ORCID 0000-0003-2159-6731
Malin Silverå EjnebyDepartment of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.ORCID 0000-0002-8151-5430
Xiongyu WuDepartment of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Samira YazdiScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.ORCID 0000-0003-2198-4590
Peter KonradssonDepartment of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Erik LindahlScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.ORCID 0000-0002-2734-2794
Fredrik ElinderDepartment of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.ORCID 0000-0001-9125-5583
Linköping University · SEStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many pharmaceutical drugs against neurological and cardiovascular disorders exert their therapeutic effects by binding to specific sites on voltage-gated ion channels of neurons or cardiomyocytes. To date, all molecules targeting known ion channel sites bind to protein pockets that are mainly surrounded by water. We describe a lipid-protein drug-binding pocket of a potassium channel. We synthesized and electrophysiologically tested 125 derivatives, analogs, and related compounds to dehydroabietic acid. Functional data in combination with docking and molecular dynamics simulations mapped a binding site for small-molecule compounds at the interface between the lipid bilayer and the transmembrane segments S3 and S4 of the voltage-sensor domain. This fundamentally new binding site for small-molecule compounds paves the way for the design of new types of drugs against diseases caused by altered excitability.

Indexed as

Binding SitesLigandsQuantitative Structure-Activity RelationshipKineticsLipid BilayersMolecular ConformationMolecular Docking SimulationMolecular Dynamics SimulationMolecular StructureMutationPotassium ChannelsProtein BindingProtein MultimerizationStatic ElectricityLigandsLipid BilayersPotassium Channels

Identifiers

PMID29075666
PMCPMC5656419
OpenAlexW2766331377

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.