Evidence map›Paper›PMID 29074972›Full record

ArticleScientific reports2017

Profiling of miRNAs and target genes related to cystogenesis in ADPKD mouse models.

Yu Mi Woo, Do Yeon Kim, Nam Jin Koo, Yong-Min Kim, Sunyoung Lee, Je Yeong Ko, Yubin Shin, Bo Hye Kim, Hyowon Mun, Seonju Choi and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
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  7. Article
  8. Article
  9. MicroRNAs in kidney injury and disease.Nature reviews. Nephrology · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Recent Discoveries in Epigenetic Modifications of Polycystic Kidney Disease.International journal of molecular sciences · 2021
    Review
  18. Suppression ofBiomolecules & therapeutics · 2021
    Article
  19. Non-Coding RNAs in Hereditary Kidney Disorders.International journal of molecular sciences · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Yu Mi WooDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Do Yeon KimDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Nam Jin KooKorean Bioinformation Center, Korea Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Yong-Min KimKorean Bioinformation Center, Korea Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea.
Sunyoung LeeDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Je Yeong KoDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Yubin ShinDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Bo Hye KimDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Hyowon MunDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Seonju ChoiDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Eun Ji LeeDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Jeong-Oh ShinDepartment of Anatomy, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea.
Eun Young ParkDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea.
Jinwoong BokDepartments of Anatomy and Otorhinolaryngology, and BK21 PLUS Project for Medical Science, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea.
Jong Hoon ParkDepartment of Biological Science, Sookmyung Women's University, Seoul, 04310, Republic of Korea. parkjh@sookmyung.ac.kr.ORCID 0000-0002-8082-0214
Sookmyung Women's University · KRYonsei University · KRKorea Research Institute of Bioscience and Biotechnology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autosomal polycystic kidney disease (ADPKD) is a common inherited renal disease characterized by the development of numerous fluid-filled cysts in both kidneys. We investigated miRNA-mediated regulatory systems and networks that play an important role during cystogenesis through integrative analysis of miRNA- and RNA-seq using two ADPKD mouse models (conditional Pkd1- or Pkd2-deficient mice), at three different time points (P1, P3, and P7). At each time point, we identified 13 differentially expressed miRNAs (DEmiRs) and their potential targets in agreement with cyst progression in both mouse models. These targets were involved in well-known signaling pathways linked to cystogenesis. More specifically, we found that the actin cytoskeleton pathway was highly enriched and connected with other well-known pathways of ADPKD. We verified that miR-182-5p regulates actin cytoskeleton rearrangement and promotes ADPKD cystogenesis by repressing its target genes-Wasf2, Dock1, and Itga4-in vitro and in vivo. Our data suggest that actin cytoskeleton may play an important role in renal cystogenesis, and miR-182-5p is a novel regulator of actin cytoskeleton and cyst progression. Furthermore, this study provides a systemic network of both key miRNAs and their targets associated with cyst growth in ADPKD.

Indexed as

TranscriptomeActin CytoskeletonAnimalsCystsDisease Models, AnimalGene Expression RegulationHomeodomain ProteinsMice, KnockoutMice, TransgenicMicroRNAsPolycystic Kidney, Autosomal DominantProtein Kinase Crac GTP-Binding ProteinsReproducibility of ResultsTRPP Cation ChannelsWiskott-Aldrich Syndrome Protein FamilyDOCK1 protein, mouseHomeodomain ProteinsHoxb7 protein, mouseMicroRNAsMirn182 microRNA, mouseProtein Kinase Cprotein kinase Drac GTP-Binding ProteinsTRPP Cation ChannelsWasf2 protein, mouseWiskott-Aldrich Syndrome Protein Family

Identifiers

PMID29074972
PMCPMC5658336
OpenAlexW2766989715

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.