Evidence map›Paper›PMID 29074739›Full record

ArticleGenome research2017

Genome-wide discovery of active regulatory elements and transcription factor footprints in

Margaret C W Ho, Porfirio Quintero-Cadena, Paul W Sternberg

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Binding of anGenetics · 2019
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Margaret C W HoDivision of Biology and Bioengineering, Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California 91125, USA.ORCID 0000-0002-2007-2226
Porfirio Quintero-CadenaDivision of Biology and Bioengineering, Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California 91125, USA.ORCID 0000-0003-0067-5844
Paul W SternbergDivision of Biology and Bioengineering, Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California 91125, USA.ORCID 0000-0002-7699-0173
California Institute of Technology · US

Funding

C. elegans transcriptional regulatory elementsR01GM084389 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN, WOLD, BARBARA J · 2010 to 2013
$1.9M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM084389
6 · The paper itself

Abstract

Deep sequencing of size-selected DNase I-treated chromatin (DNase-seq) allows high-resolution measurement of chromatin accessibility to DNase I cleavage, permitting identification of de novo active

Indexed as

Gene Expression RegulationGenome, HelminthRegulatory Sequences, Nucleic AcidAnimalsAnimals, Genetically ModifiedBinding SitesCaenorhabditis elegansChromatinConserved SequenceDeoxyribonuclease IDNA, HelminthGene ExpressionGene Expression Regulation, DevelopmentalHelminth ProteinsHigh-Throughput Nucleotide SequencingProtein BindingChromatinDeoxyribonuclease IDNA, HelminthHelminth ProteinsTranscription Factors

Identifiers

PMID29074739
PMCPMC5741056
OpenAlexW2765970765

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.