Evidence map›Paper›PMID 29073356›Full record

ArticleAnalytical chemistry2017

Microfluidic System for Detection of Viral RNA in Blood Using a Barcode Fluorescence Reporter and a Photocleavable Capture Probe.

Ke Du, Myeongkee Park, Anthony Griffiths, Ricardo Carrion, Jean Patterson, Holger Schmidt, Richard Mathies

Abstract read
In one paragraph

Article in Analytical chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
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  7. Review
  8. Review
  9. Microfluidic devices for detection of RNA viruses.Reviews in medical virology · 2021
    Review
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  16. Automated Optofluidic Analysis of Single Extracellular Vesicles for Organoid Culture Monitoring.IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ke DuDepartment of Chemistry, University of California at Berkeley , Berkeley, California 94720, United States.ORCID 0000-0003-2686-650X
Myeongkee ParkDepartment of Chemistry, University of California at Berkeley , Berkeley, California 94720, United States.
Anthony GriffithsDepartment of Virology and Immunology, Texas Biomedical Research Institute , 7620 NW Loop 410, San Antonio, Texas 78227, United States.
Ricardo CarrionDepartment of Virology and Immunology, Texas Biomedical Research Institute , 7620 NW Loop 410, San Antonio, Texas 78227, United States.
Jean PattersonDepartment of Virology and Immunology, Texas Biomedical Research Institute , 7620 NW Loop 410, San Antonio, Texas 78227, United States.
Holger SchmidtSchool of Engineering, University of California Santa Cruz , 1156 High Street, Santa Cruz, California 95064, United States.
Richard MathiesDepartment of Chemistry, University of California at Berkeley , Berkeley, California 94720, United States.
Texas Biomedical Research Institute · USUniversity of California, Berkeley · USUniversity of California, Santa Cruz · US

Funding

Hybrid integrated molecular analysis (HIMAS) for point-of-care diagnosticsR33AI100229 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SCHMIDT, HOLGER · 2014 to 2016
$1.7M
Hybrid integrated molecular analysis (HIMAS) for point-of-care diagnosticsR21AI100229 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SCHMIDT, HOLGER · 2012 to 2013
$448k
NIAID NIH HHS R21 AI100229NIAID NIH HHS R33 AI100229
6 · The paper itself

Abstract

A microfluidic sample preparation multiplexer (SPM) and assay procedure is developed to improve amplification-free detection of Ebola virus RNA from blood. While a previous prototype successfully detected viral RNA following off-chip RNA extraction from infected cells, the new device and protocol can detect Ebola virus in raw blood with clinically relevant sensitivity. The Ebola RNA is hybridized with sequence specific capture and labeling DNA probes in solution and then the complex is pulled down onto capture beads for purification and concentration. After washing, the captured RNA target is released by irradiating the photocleavable DNA capture probe with ultraviolet (UV) light. The released, labeled, and purified RNA is detected by a sensitive and compact fluorometer. Exploiting these capabilities, a detection limit of 800 attomolar (aM) is achieved without target amplification. The new SPM can run up to 80 assays in parallel using a pneumatic multiplexing architecture. Importantly, our new protocol does not require time-consuming and problematic off-chip probe conjugation and washing. This improved SPM and labeling protocol is an important step toward a useful POC device and assay.

Indexed as

DNA Barcoding, TaxonomicFluorescenceMicrofluidic Analytical TechniquesDNA ProbesEbolavirusHumansPhotochemical ProcessesRNA, ViralDNA ProbesRNA, Viral

Identifiers

PMID29073356
PMCPMC5990416
OpenAlexW2766967105

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.