Evidence map›Paper›PMID 29073019›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Structure and dynamics of the RNAPII CTDsome with Rtt103.

Olga Jasnovidova, Tomas Klumpler, Karel Kubicek, Sergei Kalynych, Pavel Plevka, Richard Stefl

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In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  4. ThrScience advances · 2024
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  17. Chemical shift-based methods in NMR structure determination.Progress in nuclear magnetic resonance spectroscopy
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Olga JasnovidovaCEITEC-Central European Institute of Technology, Masaryk University, CZ-62500 Brno, Czech Republic.ORCID 0000-0002-8362-7647
Tomas KlumplerCEITEC-Central European Institute of Technology, Masaryk University, CZ-62500 Brno, Czech Republic.
Karel KubicekCEITEC-Central European Institute of Technology, Masaryk University, CZ-62500 Brno, Czech Republic.
Sergei KalynychCEITEC-Central European Institute of Technology, Masaryk University, CZ-62500 Brno, Czech Republic.
Pavel PlevkaCEITEC-Central European Institute of Technology, Masaryk University, CZ-62500 Brno, Czech Republic.
Richard SteflCEITEC-Central European Institute of Technology, Masaryk University, CZ-62500 Brno, Czech Republic richard.stefl@ceitec.muni.cz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA polymerase II contains a long C-terminal domain (CTD) that regulates interactions at the site of transcription. The CTD architecture remains poorly understood due to its low sequence complexity, dynamic phosphorylation patterns, and structural variability. We used integrative structural biology to visualize the architecture of the CTD in complex with Rtt103, a 3'-end RNA-processing and transcription termination factor. Rtt103 forms homodimers via its long coiled-coil domain and associates densely on the repetitive sequence of the phosphorylated CTD via its N-terminal CTD-interacting domain. The CTD-Rtt103 association opens the compact random coil structure of the CTD, leading to a beads-on-a-string topology in which the long rod-shaped Rtt103 dimers define the topological and mobility restraints of the entire assembly. These findings underpin the importance of the structural plasticity of the CTD, which is templated by a particular set of CTD-binding proteins.

Indexed as

Amino Acid SequenceCrystallography, X-RayMagnetic Resonance SpectroscopyProtein Interaction Domains and MotifsProtein MultimerizationRNA Polymerase IISaccharomyces cerevisiae ProteinsTranscription FactorsRNA Polymerase IIRtt103 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsCTDRNA polymerase IIRtt103structural biologytranscription

Identifiers

PMID29073019
PMCPMC5651779

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.