Evidence map›Paper›PMID 29071531›Full record

ArticleAmino acids2018

Structural complexity and functional diversity of plant NADPH oxidases.

Gurpreet Kaur, Kunchur Guruprasad, Brenda R S Temple, David G Shirvanyants, Nikolay V Dokholyan, Pratap Kumar Pati

Abstract read
In one paragraph

Article in Amino acids, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Overexpression ofPlants (Basel, Switzerland) · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Adaptative Mechanisms of HalophyticFrontiers in plant science · 2022
    Review
  8. Differential Regulation of NAPDH Oxidases in Salt-TolerantInternational journal of molecular sciences · 2021
    Article
  9. The Barley (Frontiers in plant science · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Superoxide Radical Metabolism in Sweet Pepper (Frontiers in plant science · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Bioinformation · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gurpreet KaurDepartment of Biotechnology, Guru Nanak Dev University, Amritsar, India.
Kunchur GuruprasadBioinformatics, Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad, India.
Brenda R S TempleR. L. Juliano Structural Bioinformatics Core Facility, School of Medicine, University of North Carolina, Chapel Hill, NC, USA.
David G ShirvanyantsDepartment of Biochemistry and Biophysics, School of Medicine, University of North Carolina, Chapel Hill, NC, USA.
Nikolay V DokholyanDepartment of Biochemistry and Biophysics, School of Medicine, University of North Carolina, Chapel Hill, NC, USA.
Pratap Kumar PatiDepartment of Biotechnology, Guru Nanak Dev University, Amritsar, India. pkpati@yahoo.com.ORCID 0000-0001-9017-7608

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Engineering allostery for in vivo protein controlR01GM123247 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOKHOLYAN, NIKOLAY · 2017 to 2019
$1.5M
Department of Biotechnology (DBT), Government of India BT/PR13965/BRB/10/883/2010Fulbright-Nehru Doctoral and Professional Research Fellowship, United States-India Educational Foundation (USIEF), New Delhi, India 1663/DPR/2012-2013Innovation in Science Pursuit for Inspired Research (INSPIRE) Programme, Department of Science and Technology (DST), Government of India DST/INSPIRE Fellowship/2010[79]NCI NIH HHS P30 CA016086NIGMS NIH HHS R01 GM123247
6 · The paper itself

Abstract

Plant NADPH oxidases also known as respiratory burst oxidase homologs (Rbohs) are a family of membrane-bound enzymes that play diverse roles in the defense response and morphogenetic processes via regulated generation of reactive oxygen species. Rbohs are associated with a variety of functions, although the reason for this is not clear. To evaluate using bioinformatics, the possible mechanisms for the observed functional diversity within the plant kingdom, 127 Rboh protein sequences representing 26 plant species were analyzed. Multiple clusters were identified with gene duplications that were both dicot as well as monocot-specific. The N-terminal sequences were observed to be highly variable. The conserved cysteine (equivalent of Cys890) in C-terminal of AtRbohD suggested that the redox-based modification like S-nitrosylation may regulate the activity of other Rbohs. Three-dimensional models corresponding to the N-terminal domain for Rbohs from Arabidopsis thaliana and Oryza sativa were constructed and molecular dynamics studies were carried out to study the role of Ca

Indexed as

Binding SitesCalciumEF Hand MotifsEvolution, MolecularGene DuplicationModels, MolecularNADPNADPH OxidasesPhylogenyPlant ProteinsProtein BindingProtein Domainsrac1 GTP-Binding ProteinCalciumNADPNADPH OxidasesPlant Proteinsrac1 GTP-Binding ProteinDiscrete molecular dynamicsHomology modelingMutationOrthologPhylogenetic analysisPlant NADPH oxidase

Identifiers

PMID29071531
PMCPMC6492275

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.