Evidence map›Paper›PMID 29071393›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018

Association mapping of drought tolerance-related traits in barley to complement a traditional biparental QTL mapping study.

Magdalena Wójcik-Jagła, Anna Fiust, Janusz Kościelniak, Marcin Rapacz

Abstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Magdalena Wójcik-JagłaDepartment of Plant Physiology, University of Agriculture in Krakow, Podłużna 3, 30-239, Kraków, Poland. magdalena.p.wojcik@gmail.com.ORCID http://orcid.org/0000-0002-3485-4085
Anna FiustDepartment of Plant Physiology, University of Agriculture in Krakow, Podłużna 3, 30-239, Kraków, Poland.
Janusz KościelniakDepartment of Plant Physiology, University of Agriculture in Krakow, Podłużna 3, 30-239, Kraków, Poland.
Marcin RapaczDepartment of Plant Physiology, University of Agriculture in Krakow, Podłużna 3, 30-239, Kraków, Poland.

Funding

Narodowe Centrum Badań i Rozwoju PBS1/A8/1/2012
6 · The paper itself

Abstract

key messageAssociation mapping of drought-related traits in barley was used to increase the density of existing QTL maps without recreating mapping populations. We used 109 spring barley genotypes exhibiting high or low drought tolerance to elucidate the associations between diversity array technology sequencing (DArTseq) and single nucleotide polymorphism (SNP) markers and various physiological parameters related to plant responses to drought conditions. The study was performed in controlled conditions (growth chambers), drought tolerance was phenotyped in the four-leaf seedlings. We identified 58 associations including 34 new markers (i.e., 16 DArTseq and 18 SNP markers). The results for three markers were consistent with the data obtained in an earlier traditional biparental QTL mapping study. The regions neighboring markers on linkage group 2H contained the highest number of significant marker-trait associations. Five markers related to the photosynthetic activity of photosystem II were detected on chromosome 4H. The lowest number of associations were observed for the sequences neighboring DArT markers on linkage group 6H. A chromosome 3H region related to water use efficiency and net photosynthesis rate in both biparental QTL, and association study, may be particularly valuable, as these parameters correspond to the ability of plants to remain highly productive under water deficit stress. Our findings confirm that association mapping can increase the density of existing QTL maps without recreating mapping populations.

Indexed as

DroughtsQuantitative Trait LociChromosome MappingGenetic Association StudiesGenetic LinkageGenetic MarkersGenotypeHordeumPhenotypePolandPolymorphism, Single NucleotideStress, PhysiologicalGenetic Markers

Identifiers

PMID29071393
PMCPMC5750332

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.