Evidence map›Paper›PMID 29070841›Full record

ArticleScientific reports2017

An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum.

Rafael M Martins, Cameron R Macpherson, Aurélie Claes, Christine Scheidig-Benatar, Hiroshi Sakamoto, Xue Yan Yam, Peter Preiser, Suchi Goel, Mats Wahlgren, Odile Sismeiro and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Microorganisms · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Microorganisms · 2022
    Article
  16. Article
  17. The Putative Bromodomain Protein PfBDP7 of the Human Malaria ParasiteFrontiers in cell and developmental biology · 2022
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Rafael M MartinsUnité Biologie des Interactions Hôte-Parasite, Institut Pasteur, Paris, 75015, France. rafamiya@gmail.com.ORCID 0000-0001-7449-0696
Cameron R MacphersonUnité Biologie des Interactions Hôte-Parasite, Institut Pasteur, Paris, 75015, France.
Aurélie ClaesUnité Biologie des Interactions Hôte-Parasite, Institut Pasteur, Paris, 75015, France.
Christine Scheidig-BenatarUnité Biologie des Interactions Hôte-Parasite, Institut Pasteur, Paris, 75015, France.
Hiroshi SakamotoUnité Biologie des Interactions Hôte-Parasite, Institut Pasteur, Paris, 75015, France.
Xue Yan YamSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Peter PreiserSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Suchi GoelMTC, Nobels väg 16, KI Solna Campus Karolinska Institutet, Box 280, SE-171 77, Stockholm, Sweden.
Mats WahlgrenMTC, Nobels väg 16, KI Solna Campus Karolinska Institutet, Box 280, SE-171 77, Stockholm, Sweden.
Odile SismeiroPlateforme 2, Transcriptome et Epigenome, Institut Pasteur, Paris, 75015, France.
Jean-Yves CoppéePlateforme 2, Transcriptome et Epigenome, Institut Pasteur, Paris, 75015, France.
Artur ScherfUnité Biologie des Interactions Hôte-Parasite, Institut Pasteur, Paris, 75015, France. artur.scherf@pasteur.fr.ORCID 0000-0003-2411-3328

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variegated surface antigen expression is key to chronic infection and pathogenesis of the human malaria parasite Plasmodium falciparum. This protozoan parasite expresses distinct surface molecules that are encoded by clonally variant gene families such as var, rif and stevor. The molecular mechanisms governing activation of individual members remain ill-defined. To investigate the molecular events of the initial transcriptional activation process we focused on a member of the apicomplexan ApiAP2 transcription factor family predicted to bind to the 5' upstream regions of the var gene family, AP2-exp (PF3D7_1466400). Viable AP2-exp mutant parasites rely on expressing no less than a short truncated protein including the N-terminal AP2 DNA-binding domain. RNA-seq analysis in mutant parasites revealed transcriptional changes in a subset of exported proteins encoded by clonally variant gene families. Upregulation of RIFINs and STEVORs was validated at the protein levels. In addition, morphological alterations were observed on the surface of the host cells infected by the mutants. This work points to a complex regulatory network of clonally variant gene families in which transcription of a subset of members is regulated by the same transcription factor. In addition, we highlight the importance of the non-DNA binding AP2 domain in functional gene regulation.

Indexed as

Gene Expression RegulationGenes, ProtozoanGenetic VariationPlasmodium falciparumProtozoan ProteinsProtozoan Proteins

Identifiers

PMID29070841
PMCPMC5656681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.