Evidence map›Paper›PMID 29070786›Full record

ArticleScientific reports2017

Binding patterns of homo-peptides on bare magnetic nanoparticles: insights into environmental dependence.

Silvia A Blank-Shim, Sebastian P Schwaminger, Monika Borkowska-Panek, Priya Anand, Peyman Yamin, Paula Fraga-García, Karin Fink, Wolfgang Wenzel, Sonja Berensmeier

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 36 citations in OpenAlex.

  1. Microfabrication Technologies for Nanoinvasive and High-Resolution Magnetic Neuromodulation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
  2. Comparative Evaluation of Different Surface Coatings of FeInternational journal of molecular sciences · 2022
    Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Silvia A Blank-ShimBioseparation Engineering Group, Department of Mechanical Engineering, Technical University of Munich, 85748, Garching b. München, Germany.ORCID 0000-0003-0239-8545
Sebastian P SchwamingerBioseparation Engineering Group, Department of Mechanical Engineering, Technical University of Munich, 85748, Garching b. München, Germany.ORCID 0000-0002-8627-0807
Monika Borkowska-PanekInstitute of Nanotechnology, Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany.
Priya AnandInstitute of Nanotechnology, Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany.
Peyman YaminInstitute of Nanotechnology, Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany.
Paula Fraga-GarcíaBioseparation Engineering Group, Department of Mechanical Engineering, Technical University of Munich, 85748, Garching b. München, Germany.ORCID 0000-0001-8043-8237
Karin FinkInstitute of Nanotechnology, Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany.
Wolfgang WenzelInstitute of Nanotechnology, Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany. wolfgang.wenzel@kit.edu.
Sonja BerensmeierBioseparation Engineering Group, Department of Mechanical Engineering, Technical University of Munich, 85748, Garching b. München, Germany. s.berensmeier@tum.de.ORCID 0000-0002-4943-848X
Karlsruhe Institute of Technology · DETechnical University of Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Magnetic nanoparticles (MNP) are intensively investigated for applications in nanomedicine, catalysis and biotechnology, where their interaction with peptides and proteins plays an important role. However, the characterisation of the interaction of individual amino acids with MNP remains challenging. Here, we classify the affinity of 20 amino acid homo-hexamers to unmodified iron oxide nanoparticles using peptide arrays in a variety of conditions as a basis to identify and rationally design selectively binding peptides. The choice of buffer system is shown to strongly influence the availability of peptide binding sites on the MNP surface. We find that under certain buffer conditions peptides of different charges can bind the MNP and that the relative strength of the interactions can be modulated by changing the buffer. We further present a model for the competition between the buffer and the MNP's electrostatically binding to the adsorption sites. Thereby, we demonstrate that the charge distribution on the surface can be used to correlate the binding of positively and negatively charged peptides to the MNP. This analysis enables us to engineer the binding of MNP on peptides and contribute to better understand the bio-nano interactions, a step towards the design of affinity tags for advanced biomaterials.

Indexed as

AdsorptionBinding SitesMagnetite NanoparticlesParticle SizePeptide FragmentsStatic ElectricitySurface PropertiesMagnetite NanoparticlesPeptide Fragments

Identifiers

PMID29070786
PMCPMC5656586
OpenAlexW2765491445

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.