Evidence map›Paper›PMID 29070678›Full record

ArticleThe Journal of biological chemistry2017

DnaC, the indispensable companion of DnaB helicase, controls the accessibility of DnaB helicase by primase.

Magdalena M Felczak, Sundari Chodavarapu, Jon M Kaguni

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Magdalena M FelczakFrom the Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1319.
Sundari ChodavarapuFrom the Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1319.
Jon M KaguniFrom the Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1319 kaguni@msu.edu.
Michigan State University · US

Funding

Recruitment and activation of DnaB helicase in Escherichia coli DNA replicationR01GM090063 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KAGUNI, JON M · 2011 to 2014
$1.0M
NIGMS NIH HHS R01 GM090063
6 · The paper itself

Abstract

Former studies relying on hydrogen/deuterium exchange analysis suggest that DnaC bound to DnaB alters the conformation of the N-terminal domain (NTD) of DnaB to impair the ability of this DNA helicase to interact with primase. Supporting this idea, the work described herein based on biosensor experiments and enzyme-linked immunosorbent assays shows that the DnaB-DnaC complex binds poorly to primase in comparison with DnaB alone. Using a structural model of DnaB complexed with the C-terminal domain of primase, we found that Ile-85 is located at the interface in the NTD of DnaB that contacts primase. An alanine substitution for Ile-85 specifically interfered with this interaction and impeded DnaB function in DNA replication, but not its activity as a DNA helicase or its ability to bind to ssDNA. By comparison, substitutions of Asn for Ile-136 (I136N) and Thr for Ile-142 (I142T) in a subdomain previously named the helical hairpin in the NTD of DnaB altered the conformation of the helical hairpin and/or compromised its pairwise arrangement with the companion subdomain in each brace of protomers of the DnaB hexamer. In contrast with the I85A mutant, the latter were defective in DNA replication due to impaired binding to both ssDNA and primase. In view of these findings, we propose that DnaC controls the ability of DnaB to interact with primase by modifying the conformation of the NTD of DnaB.

Indexed as

Adenosine TriphosphateAmino Acid SubstitutionBinding SitesDNA, BacterialDnaB HelicasesDNA PrimaseDNA ReplicationDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsGeobacillus stearothermophilusHydrolysisModels, MolecularMolecular Dynamics SimulationMutagenesis, Site-DirectedProtein ConformationAdenosine TriphosphateDNA, BacterialDnaB HelicasesdnaB protein, E coliDnaC protein, E coliDNA PrimaseDNA, Single-StrandedEscherichia coli ProteinsDnaCDNA helicaseDNA primaseDNA replicationEscherichia coli (E. coli)helicase loadinghydrogen-deuterium exchangemass spectrometry (MS)protein dynamic

Identifiers

PMID29070678
PMCPMC5743064
OpenAlexW2765749173

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.