Evidence map›Paper›PMID 29069493›Full record

ArticleMolecular biology and evolution2018

Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants.

Dongying Gao, Ye Chu, Han Xia, Chunming Xu, Karolina Heyduk, Brian Abernathy, Peggy Ozias-Akins, James H Leebens-Mack, Scott A Jackson

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Transferability ofJournal of genetics · 2024
    Article
  5. Review
  6. Article
  7. Transposable Elements Co-Option in Genome Evolution and Gene Regulation.International journal of molecular sciences · 2023
    Review
  8. Article
  9. Annotation of Siberian Larch (Plants (Basel, Switzerland) · 2022
    Article
  10. TAR30, a homolog of the canonical plant TTTAGGG telomeric repeat, is enriched in the proximal chromosome regions of peanut (Arachis hypogaea L.).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2022
    Article
  11. Article
  12. Horizontal Gene Transfers in Plants.Life (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Dongying GaoCenter for Applied Genetic Technologies, University of Georgia, Athens, GA.
Ye ChuDepartment of Horticulture, University of Georgia, Tifton, GA.
Han XiaCenter for Applied Genetic Technologies, University of Georgia, Athens, GA.
Chunming XuCenter for Applied Genetic Technologies, University of Georgia, Athens, GA.
Karolina HeydukDepartment of Plant Biology, University of Georgia, Athens, GA.
Brian AbernathyCenter for Applied Genetic Technologies, University of Georgia, Athens, GA.
Peggy Ozias-AkinsDepartment of Horticulture, University of Georgia, Tifton, GA.
James H Leebens-MackDepartment of Plant Biology, University of Georgia, Athens, GA.
Scott A JacksonCenter for Applied Genetic Technologies, University of Georgia, Athens, GA.
University of Georgia · USApplied Genetic Technologies (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Even though lateral movements of transposons across families and even phyla within multicellular eukaryotic kingdoms have been found, little is known about transposon transfer between the kingdoms Animalia and Plantae. We discovered a novel non-LTR retrotransposon, AdLINE3, in a wild peanut species. Sequence comparisons and phylogenetic analyses indicated that AdLINE3 is a member of the RTE clade, originally identified in a nematode and rarely reported in plants. We identified RTE elements in 82 plants, spanning angiosperms to algae, including recently active elements in some flowering plants. RTE elements in flowering plants were likely derived from a single family we refer to as An-RTE. Interestingly, An-RTEs show significant DNA sequence identity with non-LTR retroelements from 42 animals belonging to four phyla. Moreover, the sequence identity of RTEs between two arthropods and two plants was higher than that of homologous genes. Phylogenetic and evolutionary analyses of RTEs from both animals and plants suggest that the An-RTE family was likely transferred horizontally into angiosperms from an ancient aphid(s) or ancestral arthropod(s). Notably, some An-RTEs were recruited as coding sequences of functional genes participating in metabolic or other biochemical processes in plants. This is the first potential example of horizontal transfer of transposons between animals and flowering plants. Our findings help to understand exchanges of genetic material between the kingdom Animalia and Plantae and suggest arthropods likely impacted on plant genome evolution.

Indexed as

Gene Transfer, HorizontalRetroelementsAnimalsArachisArthropodsBase SequenceGenome, PlantPhylogenySequence Homology, Nucleic AcidRetroelementsarthropodsflowering plantsgenome evolutionhorizontal transfernon-LTR retrotransposon

Identifiers

PMID29069493
PMCPMC5850137
OpenAlexW2765379631

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.