Evidence map›Paper›PMID 29069413›Full record

ArticleNucleic acids research2018

WormBase 2017: molting into a new stage.

Raymond Y N Lee, Kevin L Howe, Todd W Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J Chen, Paul Davis, Sibyl Gao, Christian Grove and 20 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  6. Article
  7. Robustness and variability inbioRxiv : the preprint server for biology · 2024
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  15. In silico Methods for Identification of Potential Therapeutic Targets.Interdisciplinary sciences, computational life sciences · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Raymond Y N LeeDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Kevin L HoweEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Todd W HarrisInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Valerio ArnaboldiDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Scott CainInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Juancarlos ChanDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Wen J ChenDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Paul DavisEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Sibyl GaoInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Christian GroveDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Ranjana KishoreDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Hans-Michael MullerDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Cecilia NakamuraDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Paulo NuinInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Michael PauliniEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Daniela RacitiDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Faye RodgersWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Matt RussellEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Gary SchindelmanDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Mary Ann TuliDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Kimberly Van AukenDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Qinghua WangDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Gary WilliamsEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Adam WrightInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Karen YookDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Matthew BerrimanWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Paul KerseyEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Tim SchedlDepartment of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA.
Lincoln SteinInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Paul W SternbergDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

Funding

WormBase: a core data resource for C. elegans and other nematodesU41HG002223 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI KERSEY, PAUL, SCHEDL, TIM · 2013 to 2017
$20.5M
WormBase: a core data resource for C. elegans and other nematodesU24HG002223 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI TIM SCHEDL, PAUL Warren STERNBERG · 2018 to 2026
$18.9M
Streamlined capture and curation of unpublished dataU01LM012672 · NLM · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI SCHEDL, TIM, STERNBERG, PAUL WARREN · 2017 to 2020
$2.3M
Medical Research Council MR/L001020/1NHGRI NIH HHS U24 HG002223NHGRI NIH HHS U41 HG002223NLM NIH HHS U01 LM012672
6 · The paper itself

Abstract

WormBase (http://www.wormbase.org) is an important knowledge resource for biomedical researchers worldwide. To accommodate the ever increasing amount and complexity of research data, WormBase continues to advance its practices on data acquisition, curation and retrieval to most effectively deliver comprehensive knowledge about Caenorhabditis elegans, and genomic information about other nematodes and parasitic flatworms. Recent notable enhancements include user-directed submission of data, such as micropublication; genomic data curation and presentation, including additional genomes and JBrowse, respectively; new query tools, such as SimpleMine, Gene Enrichment Analysis; new data displays, such as the Person Lineage browser and the Summary of Ontology-based Annotations. Anticipating more rapid data growth ahead, WormBase continues the process of migrating to a cutting-edge database technology to achieve better stability, scalability, reproducibility and a faster response time. To better serve the broader research community, WormBase, with five other Model Organism Databases and The Gene Ontology project, have begun to collaborate formally as the Alliance of Genome Resources.

Indexed as

Databases, GeneticGenomeAnimalsCaenorhabditisCaenorhabditis elegansData CurationData MiningDatasets as TopicDisease Models, AnimalForecastingGene OntologyHumansInformation Storage and RetrievalNematodaPlatyhelminthsPublishing

Identifiers

PMID29069413
PMCPMC5753391

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.