Evidence map›Paper›PMID 29067635›Full record

ArticleJournal of neurovirology2017

Interferon regulated gene (IRG) expression-signature in a mouse model of chikungunya virus neurovirulence.

Sreeja R Nair, Rachy Abraham, Sankar Sundaram, Easwaran Sreekumar

Abstract read
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In one paragraph

Article in Journal of neurovirology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. AnViruses · 2025
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  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Chikungunya fever.Nature reviews. Disease primers · 2023
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. RTP4 inhibits IFN-I response and enhances experimental cerebral malaria and neuropathology.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sreeja R NairMolecular Virology Laboratory, Rajiv Gandhi Centre for Biotechnology (RGCB), Thycaud P.O., Thiruvananthapuram, Kerala, 695014, India.
Rachy AbrahamMolecular Virology Laboratory, Rajiv Gandhi Centre for Biotechnology (RGCB), Thycaud P.O., Thiruvananthapuram, Kerala, 695014, India.
Sankar SundaramDepartment of Pathology, Government Medical College, Kottayam, Kerala, India.
Easwaran SreekumarMolecular Virology Laboratory, Rajiv Gandhi Centre for Biotechnology (RGCB), Thycaud P.O., Thiruvananthapuram, Kerala, 695014, India. esreekumar@rgcb.res.in.
Rajiv Gandhi Centre for Biotechnology · INGovernment Medical College · IN

Funding

Department of Biotechnology , Ministry of Science and Technology BT/PR13801/MED/29/952/2015
6 · The paper itself

Abstract

Interferon regulated genes (IRGs) are critical in controlling virus infections. Here, we analyzed the expression profile of IRGs in the brain tissue in a mouse model of chikungunya virus (CHIKV) neurovirulence. Neurovirulence is one of the newer complications identified in disease caused by re-emerging strains of CHIKV, an alphavirus with positive-strand RNA in the Togaviridae family. In microarray analysis, we identified significant upregulation of 269 genes, out of which a predominant percentage (76%) was IRGs. The highly modulated IRGs included Ifit1, Ifi44, Ddx60, Usp18, Stat1, Rtp4, Mnda, Gbp3, Gbp4, Gbp7, Oasl2, Oas1g, Ly6a, Igtp, and Gbp10, along with many others exhibiting lesser changes in expression levels. We found that these IRG mRNA transcripts are modulated in parallel across CHIKV-infected mouse brain tissues, human neuronal cell line IMR-32 and hepatic cell line Huh-7. The genes identified to be highly modulated both in mouse brain and human neuronal cells were Ifit1, Ifi44, Ddx60, Usp18, and Mnda. In Huh-7 cells, however, only two IRGs (Gbp4 and Gbp7) showed a similar level of upregulation. Concordant modulation of IRGs in both mice and human cells indicates that they might play important roles in regulating CHIKV replication in the central nervous system (CNS). The induction of several IRGs in CNS during infection underscores the robustness of IRG-mediated innate immune response in CHIKV restriction. Further studies on these IRGs would help in evolving possibilities for their targeting in host-directed therapeutic interventions against CHIKV.

Indexed as

Host-Pathogen InteractionsAdaptor Proteins, Signal TransducingAnimalsAntigensAntigens, Differentiation, MyelomonocyticBrainCarrier ProteinsCell LineChikungunya FeverChikungunya virusCytoskeletal ProteinsDEAD-box RNA HelicasesDisease Models, AnimalEndopeptidasesGene Expression RegulationHepatocytesAdaptor Proteins, Signal TransducingAntigensAntigens, Differentiation, MyelomonocyticCarrier ProteinsCytoskeletal ProteinsDDX60 protein, humanDEAD-box RNA HelicasesEndopeptidasesIFI44 protein, humanIFIT1 protein, humanInterferon Regulatory FactorsMNDA protein, humanRNA-Binding ProteinsRNA, MessengerTranscription FactorsUbiquitin ThiolesteraseUSP18 protein, humanviral interferon regulatory factorsViral ProteinsChikungunyaInterferon stimulated genesISGMiceMicroarrayTranscript

Identifiers

PMID29067635
OpenAlexW2765215988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.